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. 2011 Aug 3;20(1):77–83. doi: 10.1038/ejhg.2011.138

Figure 3.

Figure 3

Correlation between the allele frequencies estimated by sequencing of pools (x axes) and from individual genotyping (y axes). Correlation for (a) SNPs genotyped on the array (n=240); (b) SNPs where the array frequencies were inferred by imputation (n=2217); (c) SNPs with at least 10 000 fold coverage (n=1059) and where the array frequencies were inferred by imputation; and (d) SNPs with at most 2000-fold coverage (n=186) and where the array frequencies were inferred by imputation; (e) comparison of the allele frequencies for of a set of novel low frequency SNPs detected by the method and by individual TaqMan genotyping in 480 individuals from the NSPHS cohort.