Table 2.
A summary report for CLC Bio reference assembly of M. avium and M. ap isolates.
| ATCC 19698 | M. ap 4B | JTC 1281 | JTC 1285 | DT 3 | Env 210 | DT 78 | |
|---|---|---|---|---|---|---|---|
| Reference organism | M. ap K-10 | M. ap K-10 | M. ap K-10 | M. ap K-10 | M. ap K-10 | M. ap K-10 | M. avium 104 |
| Reference length | 4,832,589 | 4,832,589 | 4,832,589 | 4,832,589 | 4,832,589 | 4,832,589 | 5,475,491 |
| Total read count | 5,994,312 | 6,729,396 | 4,645,230 | 5,985,952 | 6,374,242 | 6,294,162 | 6,978,706 |
| Matched read count | 5,417,459 | 6,522,333 | 4,164,731 | 5,391,674 | 6,177,155 | 6,080,493 | 5,637,136 |
| Non-specific match read counta | 53,145 | 56,051 | 39,879 | 54,951 | 50,700 | 53,340 | 61,192 |
| Consensus length | 4,822,328 | 4,815,985 | 4.823.742 | 4,823,165 | 4,815,376 | 4,817,334 | 4,808,427 |
| Homology (%)b | 99.79 | 99.66 | 99.82 | 99.80 | 99.64 | 99.68 | 87.82 |
| Average coveragec | 55.77 | 68.71 | 42.87 | 55.50 | 65.07 | 64.05 | 51.16 |
aNon-specific match read counts are those reads that can be matched more than one place in the reference genome and such reads were randomly placed in one of the matched spots.
bHomology percentage was calculated as: consensus length divided by reference length and then multiplies 100.
cAverage coverage is the average of all the reads coverage in each area in the consensus sequence.