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. 2011 Dec 9;6(12):e28122. doi: 10.1371/journal.pone.0028122

Table 2. Oligonucleotides used in this study.

Primer Sequence pMF1 coordinates
par-up 5′ccggatccCGCATCGGGTGAGCGTAGAG3′ 17242-17261
par-down1 5′ccggaattcCCCACCCCAAAACGACAAGAGG3′ 50-29
par-down2 5′ccggaattcTCGCCGCAGCTTCAGCCCTC3′ 1136-1117
*parCmu-up2 5′CGACTCGCTCATTTCCGACCC3′ 17427-17447
*parCmu-down1 5′GGGTCGGAAATGAGCGAGTCGATGGTCGCGCAGGCGGTGGAG3′ 17427-17447 17610-17630
*parAmu-up2 5′TTCGCCAGCTCCACCGCCTGC3′ 17618-17638
*parAmu-down1 5′GCAGGCGGTGGAGCTGGCGAAGTCCTCTCCGCCTCAACCACC3′ 17618-17638 18146-18166
*parBmu-up2 5′AACCTCGGCCGGCGGGGCACG3′ 18372-18392
*parBmu-down1 5′CGTGCCCCGCCGGCCGAGGTTCAAATTGCCGAGGAGTTGTTCGAC3′ 18372-18392 18555-18578
**parC-u: 5′gggaattc CATATGGGCGGGCGTCACAGGG3′ 17392-17409
**parC-d: 5′cgcggatcc TCATCGGCCCGCCTTCTTCGC3′ 17634-17654
**parB-u: 5′gggaattc CATATGCGTGCCCCGCCGGCCGA3′ 17370-17388
**parB-d: 5′cgcggatcc CTACTTGGGGAGATACTTGTCGA3′ 17574-17596
DupupBiotin 5′CGCATCGGGTGAGCGTAGAG3′ 17242-17261
Dupdo 5′CGACTCGCTCATTTCCGACCC3′ 17428-17447
ItA 5′GGAAGTCTGGAAGTCTAGATGTCTAGATGTTTGAATGTTTGGAGTGGG3′ 17348-17395
ItB 5′GTGATGTCTAGAGGTCTGGATGTCTAGATGTCTAGATGTCT3′ 18596-3
ItC 5′AGACATCTGGAAGTCTGGATGTC3′ 13514-13537
ItD 5′AGAAGTCCAGACATCTGGACATTCAGAAGTCTAGACATCTGGATGTCCAGATGGGG 3′ 14102-14157
ItE 5′AAGTGTCTAGATGTCTAGATGTCT3′ 14947-14970
ItF 5′AGAGGTCTAGGTGTCTGGAAGTCTGGAGGTCTGGATGTC3′ 15863-15902
***parC-up 5′GGAAGAGGTCAGGGCGGCAAAG3′ 17480-17501
***parC-down 5′GCCTTCTTCGCCAGCTCCAC3′ 17625-17644
***parA-up 5′ATGATTGTCGCGGTCGTGTCCC3′ 17651-17672
***parA-down 5′TCCGCATCCACCACCAGCACG3′ 17743-17763
***parB-up 5′TCCGAGCGACCCTCAACTTG3′ 18449-18468
***parB-down 5′CCTCGGCAATTTGGGAGTGTTC3′ 18546-18567
16S-up 5′CGCCGTAAACGATGAGAA3′
16S-down 5′TTGCGT CGAATTAAACCAC3′

*primers used in gene deletion.

**primers used in gene expression in E.coli.

***primers used in quantitative PCR.