Table 3.
SNP | Primer | Primer sequence (5' to 3') | Product length | Annealing temperature | Further analysis |
---|---|---|---|---|---|
rs10736303 | F | AGGGACAAATACTCCGCACA | 405 bp | 50°C | Sanger sequencing |
R | AGCCATCCAGCATGTTTCTC | ||||
rs2981578 | F | TGACTCTTCAAAGTTTGTTTGTTTT | 295 bp | 50°C | Restriction enzyme AciI (New England Biolabs, Ipswich, MA, USA) |
R | GAGGAAAGGTTCCCCACACT | ||||
rs2981582 | F | AGCTCAGCTTACCCCAGACA | 215 bp | 58°C | Restriction enzyme AciI (New England Biolabs, Ipswich, MA, USA) |
R | CGTGAGCCAAGCCTCTACTT | ||||
rs7895676 | F | CAGGTGCGGTGGCTCATGTC | 345 bp | 67°C | Sanger sequencing |
R | GACTTCAATGGCGGGACTCC |
aFGFR2: fibroblast growth factor receptor 2 gene; F: forward primer; R: reverse primer; bp: base pair. For each SNP, the forward and reverse primer sequences, the length of the resulting PCR product and the annealing temperature used during PCR are shown. Also shown is the technique that was used on the resulting PCR fragment to genotype the SNPs.