Table 1. Top list of putative floral repressors and activators shared between R. x. wichurana and “Félicité et Perpétue”.
| R. x. wichurana | “Félicité et Perpétue” | ||||
| Gene | annotation | Log(ratio) VM2/WM1 | Log(ratio) FM/WM2 | Log(ratio) VM2/WM1 | Log(ratio) FM/WM2 |
| repressors | |||||
| EC58630 | 0,00 | −2,77 | −0,95 | −1,03 | −0,71 |
| BQ104485 | (Q5NE18) Formate dehydrogenase | −2,75 | 1,05 | −1,14 | − |
| EC589917 | (Q3T923) Fra a 1 allergen (Fra a 1-A allergen) | −2,08 | −0,34 | −4,93 | 0,20 |
| CF349421 | (Q7XHM6) Hypothetical protein OSJNBb0095H08.9 | −1,98 | 1,13 | −0,75 | −0,29 |
| CF349812 | (Q8H7G2) Hypothetical protein (Q8H7G2_ARATH) | −1,97 | 1,22 | −1,00 | 0,32 |
| EC587235 | 0,00 | −1,81 | 0,76 | −0,84 | 0,46 |
| EC587845 | (Q8L5Z1) Hypothetical protein At1g33810 (Q8L5Z1_ARATH) | −1,79 | 0,03 | −1,65 | 0,41 |
| CF349438 | (O81644) Villin-2 (VILI2_ARATH) | −1,78 | 2,21 | −0,87 | 0,07 |
| CF349322 | (Q1RST0) Peptidase S1 and S6 | −1,76 | 2,40 | −2,10 | 0,01 |
| CF349916 | (Q564G6) Galactomannan galactosyltransferase | −1,72 | 0,60 | −1,01 | −0,24 |
| EC587239 | 0,00 | −1,71 | 1,57 | −1,68 | 0,36 |
| BQ105944 | ATP-dependent Clp protease ATP-binding subunit | −1,70 | 1,69 | −1,08 | −0,13 |
| BQ105308 | (Q533V0) Phospholipase D alpha (EC 3.1.4.4) | −1,69 | 1,85 | −0,84 | 0,31 |
| CF349664 | (Q1S2R3) GIGANTEA protein (Q1S2R3_MEDTR) | −1,68 | −0,13 | −1,27 | 0,16 |
| BI977439 | (Q8L553) SCARECROW transcriptional regulator-like | −1,67 | 1,13 | −1,29 | −0,19 |
| EC586479 | 0,00 | −1,66 | 1,40 | −1,24 | −0,24 |
| BQ104603 | 0,00 | −1,65 | 2,31 | −1,19 | 1,00 |
| EC588955 | 0,00 | −1,61 | 0,19 | −1,01 | 0,67 |
| BQ106662 | (O04136) Homeobox protein knotted-1-like 3 (KNAP3)) | −1,58 | 1,09 | −1,02 | −0,17 |
| CF349422 | (Q9SWH0) Plasma membrane proton ATPase | −1,53 | 1,54 | −1,03 | 0,13 |
| BQ106489 | 0,00 | −1,52 | 0,98 | −2,22 | − |
| EC586088 | (Q41695) Pectinacetylesterase precursor | −1,48 | 1,58 | −1,32 | 0,86 |
| EC588764 | (Q2HTG1) GTP-binding signal recognition particle SRP54 | −1,48 | 1,09 | −1,26 | −0,37 |
| BI977401 | (Q2AAC8) Cysteine proteinase | −1,46 | 0,60 | −1,50 | 0,13 |
| BQ104821 | (Q2R3E0) Alpha-mannosidase | −1,46 | 1,43 | −0,74 | −0,11 |
| BQ103923 | (Q84V96) Aldehyde dehydrogenase 1 precursor | −1,46 | 0,74 | −1,64 | 0,58 |
| BQ104041 | 0,00 | −1,45 | 1,98 | −1,47 | 0,43 |
| EC587517 | (Q71BZ1) Type-B response regulator (Q71BZ1_CATRO) | −1,42 | 1,58 | −0,70 | - |
| EC588090 | 0,00 | −1,42 | - | −2,18 | 0,48 |
| BQ105490 | 0,00 | −1,37 | 1,83 | −5,92 | −0,84 |
| BQ103990 | (Q8RWI9) Hypothetical protein At3g21090 (Q8RWI9_ARATH) | −1,36 | 1,32 | −1,01 | −0,26 |
| EC586608 | 0,00 | −1,30 | 0,91 | −0,99 | 0,38 |
| BI978794 | (Q05349) Auxin-repressed 12.5 kDa protein (12KD_FRAAN) | −1,30 | 0,49 | −2,62 | −0,80 |
| CF349291 | (Q9SGU9) Similar to O-succinylhomoserine sulfhydrylase | −1,26 | 0,89 | −0,96 | 0,01 |
| EC586448 | (Q94BT2) Auxin-induced in root cultures protein 12 precursor | −1,26 | −0,57 | −0,77 | −0,72 |
| activators | |||||
| BI978967 | (Q6Z2K3) Putative Avr9/Cf-9 rapidly elicited | 1,06 | 0,27 | 0,75 | −0,04 |
| BI977621 | (Q8L5J6) Expansin 3 (Q8L5J6_MALDO) | 1,08 | −0,50 | 1,01 | 0,98 |
| BQ104361 | (Q650W6) Putative nucleic acid-binding prot. | 1,08 | - | 1,40 | −0,29 |
| EC588171 | (Q1SZF1) Allergen V5/Tpx-1 related | 1,11 | −0,75 | 1,29 | 0,79 |
| EC586116 | 0,00 | 1,12 | −1,17 | 1,14 | 0,34 |
| EC589388 | (Q1SHH7) Auxin responsive SAUR protein | 1,14 | −0,02 | 1,52 | 0,47 |
| BI978946 | (Q93Z01) AT5g58730 | 1,20 | −1,03 | 1,55 | −0,17 |
| RoAGL20 | (Q7Y137) MADS-box protein PTM5 | 1,22 | - | 0,97 | 0,14 |
| BQ105514 | 0,00 | 1,23 | −0,74 | 0,72 | −0,02 |
| BI977348 | (Q94AQ7) Hypothetical protein At5g11280 | 1,23 | 0,50 | 0,73 | −0,47 |
| BQ103904 | (Q41696) Cysteine protease precursor | 1,25 | −2,35 | 2,55 | 0,20 |
| EC589855 | 0,00 | 1,27 | −0,03 | 0,71 | −0,44 |
| BI978115 | (Q84W81) Hypothetical protein At5g49800 | 1,27 | 0,34 | 1,85 | −0,57 |
| EC586690 | Q2QXK7) F-box domain, putative | 1,31 | −0,91 | 1,36 | −0,02 |
| EC588294 | (Q1S0D0) Glyoxalase/bleomycin resistance protein | 1,32 | −0,46 | 0,77 | 1,19 |
| EC588783 | (Q9LUC1) Putative protein At3g14740 | 1,34 | 0,27 | 1,19 | −0,31 |
| RoAP1a | (Q283Q1) APETALA1 protein | 1,38 | −0,40 | 2,06 | 0,88 |
| EC587486 | 0,00 | 1,42 | −0,62 | 1,38 | −0,35 |
| BI978732 | (P32293) Auxin-induced protein 22A | 1,47 | −0,36 | 1,27 | 1,28 |
| BQ104100 | 0,00 | 1,55 | −0,94 | 1,49 | 1,03 |
| BQ105108 | (O65744) GDP dissociation inhibitor | 1,63 | −3,09 | 2,13 | 0,17 |
Log(ratio) of intensities are represented, italicized numbers represent ratios for which the p-value of the Bonferroni test was higher than 0.05. -: no value could be calculated.