Table 1.
Summary of fundamental network concepts in real network applications.
| Fly Protein | Yeast Protein | Yeast (Weighted) | Yeast (Unweighted) | |||||
|---|---|---|---|---|---|---|---|---|
| Concept | Proper | Grey | Proper | Grey | Proper | Grey | Proper | Grey |
| Factorizability | .82 (.086) | .170 | .85 (.100) | .200 | .73 (.084) | .180 | .62 (.130) | .110 |
| Density | .21 (.074) | .017 | .28 (.120) | .026 | .08 (.056) | .005 | .40 (.150) | .024 |
| Centralization | .18 (.091) | .052 | .20 (.055) | .036 | .10 (.026) | .021 | .41 (.110) | .140 |
| Heterogeneity | .35 (.130) | .460 | .36 (.140) | .430 | .56 (.066) | .580 | .51 (.097) | .830 |
| Mean Cluster Coef. | .28 (.110) | .050 | .36 (.120) | .093 | .13 (.072) | .032 | .72 (.087) | .370 |
| Mean Conformity | .45 (.076) | .130 | .51 (.120) | .150 | .26 (.084) | .062 | .63 (.100) | .120 |
Each network contained several proper modules. Non-module genes were grouped into a single (improper) grey module. For each concept, we report the mean and standard error across the proper modules. A more detailed table presenting network concepts in each module is also provided [see Additional file 1].