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. 2011 Sep 2;39(22):9779–9788. doi: 10.1093/nar/gkr667

Table 1.

Characterization of the 20 NMR structures of the p56 dimer retained for structural analysis

NMR distance constraints
    Total distance constraints 1380
    Intraresidue 216
    Sequential 268
    Medium and long range 896
    Intra-monomer 1260
    Inter-monomer 120
RMSD (residues 8–55, 20 structures)
    AMBER backbone RMSD (dimer) 1.17 ± 0.24
    AMBER heavy atom RMSD (dimer) 1.88 ± 0.21
    AMBER backbone RMSD (monomer) 1.02 ± 0.28
    AMBER heavy atom RMSD (monomer) 1.77 ± 0.26
RMSD (residues 8–17, 23–43, 46–55, 20 structures)
    AMBER backbone RMSD (dimer) 0.82 ± 0.13
    AMBER heavy atom RMSD (dimer) 1.60 ± 0.14
    AMBER backbone RMSD (monomer) 0.76 ± 0.15
    AMBER heavy atom RMSD (monomer) 1.54 ± 0.20
Distance constraints violations (>0.2 Å)
    Sum of violations 1.41 (1.11–1.69)
    Maximum violation 0.17 (0.14–0.21)
AMBER energies (kcal/mol)
    Restraint AMBER energy 7.5 (5.4–9.2)
    Total AMBER energy −1476 (−1255 to −1764)

RMSD values and violations are given in angstroms.