Table II. Numbers of conformations selected at each calculation step by specified energy cut-offs (ΔE, kcal/mol).
Receptor | EC2 (ΔE < 30) or EC3 (ΔE < 15), numbers of clusters | EC1+EC2+EC3 (ΔE < 30) | EC1+EC2+EC3+TM | |
---|---|---|---|---|
First run (ΔE < 70) | Second run (ΔE < 50) | |||
R25 | 29 | 80 | 27 | 15 |
R17 | 17 | 76 | 12a | 6 |
R115 | 25 | 280 | 47 | 32 |
R111 | 20 | 60 | 15 | 12 |
R127 | 31 | 33 | 11a | 6b |
R125 | 18 | 227 | 41 | 24 |
R128 | 28 | 146 | 38 | 10 |
| ||||
WT | 27 | 144 | 27 | 17 |
R12 | 36 | 161 | 33 | 17 |
R6 | 25 | 93 | 19 | 13 |
R27 | 29 | 268 | 61 | 19 |
R20 | 33 | 77 | 25 | 10 |
| ||||
R18 | 30c | 111 | 31 | 24 |
R10 | 25c | 204 | 45 | 31 |
R8 | 29c | 259 | 80 | 19 |
R53 | 21c | 118 | 41 | 12 |
R102 | 49c | 187 | 57 | 36 |
R105 | 18c | 80 | 30 | 14 |
R109 | 33c | 308 | 71 | 22 |
R104 | 10b | 146 | 44 | 28 |
R118 | 17c | 67d | 13 | 6 |
| ||||
K13 | 14 | 110 | 24 | 11 |
K97 | 11 | 182 | 56 | 20 |
K129 | 11 | 298 | 81 | 18 |
K132 | 13 | 169 | 48 | 20 |
K17 | 10 | 69 | 16 | 14 |
K127 | 9 | 53 | 15c | 9 |
ΔE < 100 kcal/mol;
ΔE < 70 kcal/mol;
ΔE < 25 kcal/mol;
ΔE < 40 kcal/mol.