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. Author manuscript; available in PMC: 2013 Jan 1.
Published in final edited form as: Proteins. 2011 Sep 30;80(1):71–80. doi: 10.1002/prot.23162

Table II. Numbers of conformations selected at each calculation step by specified energy cut-offs (ΔE, kcal/mol).

Receptor EC2 (ΔE < 30) or EC3 (ΔE < 15), numbers of clusters EC1+EC2+EC3 (ΔE < 30) EC1+EC2+EC3+TM

First run (ΔE < 70) Second run (ΔE < 50)
R25 29 80 27 15
R17 17 76 12a 6
R115 25 280 47 32
R111 20 60 15 12
R127 31 33 11a 6b
R125 18 227 41 24
R128 28 146 38 10

WT 27 144 27 17
R12 36 161 33 17
R6 25 93 19 13
R27 29 268 61 19
R20 33 77 25 10

R18 30c 111 31 24
R10 25c 204 45 31
R8 29c 259 80 19
R53 21c 118 41 12
R102 49c 187 57 36
R105 18c 80 30 14
R109 33c 308 71 22
R104 10b 146 44 28
R118 17c 67d 13 6

K13 14 110 24 11
K97 11 182 56 20
K129 11 298 81 18
K132 13 169 48 20
K17 10 69 16 14
K127 9 53 15c 9
a

ΔE < 100 kcal/mol;

b

ΔE < 70 kcal/mol;

c

ΔE < 25 kcal/mol;

d

ΔE < 40 kcal/mol.