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. Author manuscript; available in PMC: 2013 Jan 1.
Published in final edited form as: Proteins. 2011 Oct 4;80(1):93–110. doi: 10.1002/prot.23165

Table 3.

The results of I-TASSER structure predictions, the number of putative ligand binding sites predicted by template-based transfer and the number of active compounds in the screening library for virtual screening target proteins

TM-scorea RMSDb Number of Predicted sites Number of Actives
CDK2 0.86 1.99 22 72
EGFr 0.86 3.49 14 100
FGFr1 0.90 0.91 18 100
PDE5 0.93 1.22 6 88
Thrombin 0.91 4.28 13 72
TK 0.93 1.65 3 22
a

TM-score of the full-length I-TASSER model compared to the native.

b

The Cα RMSD (Å) of the I-TASSER model to the native in the binding site residues.