. Author manuscript; available in PMC: 2012 Oct 7.

Published in final edited form as: J Proteome Res. 2011 Sep 7;10(10):4505–4512. doi: 10.1021/pr200323a

Table 4.

Top score reconstruction of SKF from a triply charged mass spectrum. Correct reconstruction is shown in bold.

Peptide	Structure	NScore	Score	PME	protein	position	length
CMGCWASKSIAMTRVCALPHPAMRAI	cyclic	4.54	167	0.007	sp\|p37814\|atpf-bacsu	29	26
AKWLLSELNKLEKKERRKDW	cyclic	4.30	96	0.003	sp\|O32215\|held-bacsu	395	20
QSLKDLKGKTVGVQLGSIQEEKGK	cyclic	3.62	124	-0.008	sp\|P54535\|artp-bacsu	129	24