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. Author manuscript; available in PMC: 2012 Oct 7.
Published in final edited form as: J Proteome Res. 2011 Sep 7;10(10):4505–4512. doi: 10.1021/pr200323a

Table 5.

Top score reconstruction of SDP from a triply charged mass spectrum. Correct reconstruction is shown in bold.

Peptide Structure NScore Score PME protein position length
CGLYAVCVAAGYLYVVGVNAVALQTAAAVTTAVWKYVAKYSS linear 8.17 48 0.24 sp|o34344|sdpc-bacsu 140 42
SVFFLWILNFVIGFAFPILLSSVGLSFTFFIFVALGVLA linear 4.44 28 0.44 sp|p94493|yncc-bacsu 393 39
ELPGDLIARAQDILKELEHSGNKPEVPVQKPQVKEEPAQ cyclic 4.05 316 0.30 sp|p49849|muts-bacsu 767 39