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. Author manuscript; available in PMC: 2012 Oct 7.
Published in final edited form as: J Proteome Res. 2011 Sep 7;10(10):4505–4512. doi: 10.1021/pr200323a

Table 6.

Top score reconstruction for θ-defensin from a doubly charged IT spectrum. Correct reconstruction is shown in bold.

Peptide structure NScore Score PME first protein second protein length
RCICTRGFCRCLCRRGVC cyclic 15.33 160 -0.12 rhesus theta defensin-1/3 rhesus theta defensin-1/2 18
CLCRTPCNRCICTRGFCR cyclic 13.95 149 -0.16 amiloride-sensitive cation channel 1 rhesus theta defensin-1/3 18
CRCRRCRCICTRGFCRL cyclic 12.20 139 -0.10 hypothetical protein LOC697113 rhesus theta defensin-1/3 17