Table 3.
Distribution of the Nearest Neighbors of the 1,072 Universally Present Genes in M13399
| ST/CC | Results |
Bootstrapped Results |
||
| Genes | Percentage | Genes | Percentage | |
| CC269a | 508 | 47.39% | 50,050 | 46.69 |
| CC32 | 121 | 11.29% | 12,019 | 11.21 |
| CC41/44 | 57 | 5.32% | 4,935 | 4.60 |
| CC23 | 37 | 3.45% | 3,527 | 3.29 |
| CC8 | 35 | 3.26% | 3,124 | 2.91 |
| ST5 | 28 | 2.61% | 2,528 | 2.36 |
| ST751 | 25 | 2.33% | 2,317 | 2.16 |
| ST177 | 18 | 1.68% | 2,131 | 1.99 |
| CC11 | 17 | 1.59% | 1,682 | 1.57 |
| ST213 | 15 | 1.40% | 1,235 | 1.15 |
| CC22 | 14 | 1.31% | 1,339 | 1.25 |
| ST53 | 13 | 1.21% | 1,072 | 1.00 |
| ST7355 | 11 | 1.03% | 1,225 | 1.14 |
| CC167 | 10 | 0.93% | 872 | 0.81 |
| ST4 | 9 | 0.84% | 1,173 | 1.09 |
| ST1136 | 8 | 0.75% | 829 | 0.77 |
| ST4821 | 7 | 0.65% | 695 | 0.65 |
| Nlact | 1 | 0.09% | 160 | 0.15 |
| Ng | — | — | 15 | 0.01 |
| No signal | 138 | 12.87% | 16,272 | 15.18 |
| Total | 1,072 | — | 107,200 | — |
a
It is important to note that CC was assigned whenever the nearest neighbor was one of the genomes from a CC even through some genomes in a CC might be substantially different from the rest of the CC. For this reason, the percentage supporting M13399 to be CC269 here (47.39%) is much higher than the phylogenetic support (0.12) from individual gene trees in figure 1. Similar criteria also apply for other CCs.