Table 4. Results of MDR analysis.
No. of Locus | Model | p value (χ2 test) | TBA | p-value* | CVC | p-value* | |
Total Data Set | |||||||
1st order | Smk | p < 0.0001 | 0.6114 | <0.001 | 10 | 0.391 | |
2nd order | Smk Ex3 | p < 0.0001 | 0.6407 | <0.001 | 10 | 0.391 | |
3rd order | Smk Ex3 Ex4 | p < 0.0001 | 0.6497 | <0.001 | 10 | 0.391 | |
4th order** | Smk Ex3 Ex4 SULT | p < 0.0001 | 0.6503 | <0.001 | 10 | 0.391 | |
Smokers | |||||||
1st order | Ex3 | p < 0.0001 | 0.6228 | 0.012 | 10 | 0.402 | |
2nd order | Tbc Ex3 | p < 0.0001 | 0.6105 | <0.02 | 9 | 0.623 | |
3rd order** | Tbc Ex3 SULT | p < 0.0001 | 0.6436 | <0.001 | 10 | 0.402 | |
4th order | Tbc Alc Ex3 SULT | p < 0.0001 | 0.6268 | <0.008 | 7 | 0.846 | |
Non Smokers | |||||||
1st order | 2A | p = 0.0019 | 0.6170 | 0.09 | 10 | 0.372 | |
2nd order | 2A SULT | p = 0.0004 | 0.5562 | 0.46 | 8 | 0.734 | |
3rd order** | 2A P1 SULT | p < 0.0001 | 0.6677 | <0.005 | 10 | 0.372 | |
4th order | 2A 2C P1 SULT | p < 0.0001 | 0.6439 | <0.021 | 10 | 0.372 |
*1,000-fold permutation test. **Best models selected with maximum cross-validation consistency (CVC) and maximum testing balance accuracy (TBA). Labels: Smk: smoking, Ex3: EPHX1 Tyr113His, Ex4: EPHX1 His139Arg, SULT: SULT1A1 Arg213His, Tbc: tobacco chewing, Alc: alcohol consumption, 2A: CYP1A1*2A, P1: GSTP1 Ile105Val, 2C: CYP1A1*2C.