Table 2.
Genome Browser Coordinates | Gene Symbol | Distance to Gene | CpG Islands | Higher DNAm | %DNAm Diff. | p-value |
Chr3: 164,013,013–164,018,139 | Pck1 | Inside | 3 | Cortex | 44.3 | 0.0 |
Chr11: 80,333,032–80,335,418 | Ahsg | Inside | 2 | Cortex | 55.0 | 4.95E-06 |
Chr6: 7,208,313–7,211,263 | Haao | 5′ Overlap | 1 | Cortex | 43.3 | 9.90E-06 |
Chr6: 123,596,462–123,598,885 | Foxn3 | Inside | 1 | Cortex | 53.4 | 1.48E-05 |
Chr10: 87,543,661–87,546,156 | Nr1d1 | 5′ Overlap | 1 | Liver | 45.9 | 1.98E-05 |
Chr7: 127,669,312–127,672,145 | Tymp | 5′ Overlap | 3 | Cortex | 49.1 | 2.47E-05 |
Chr16: 71,242,887–71,245,895 | Tacc1 | Inside | 1 | Liver | 40.7 | 2.97E-05 |
Chr19: 39,107,530–39,109,768 | Pmfbp1 | 252.7 kb 5′ | 1 | Liver | 57.6 | 3.46E-05 |
Chr19: 55,110,402–55,112,977 | Egln1 | Inside | 1.4 kb | Liver | 42.5 | 3.96E-05 |
Chr11: 80,328,977–80,330,696 | Ahsg | 5′ Overlap | 2.9 kb | Cortex | 56.3 | 4.45E-05 |
Chr5: 61,971,442–61,973,643 | Mcart1 | 3.0 kb 5′ | 0.6 kb | Cortex | 44.5 | 4.95E-05 |
Chr10: 45,223,909–45,225,954 | Rnf187 | Inside | 1.0 kb | Liver | 52.7 | 5.44E-05 |
Chr1: 246,606,435–246,608,736 | Pik3ap1 | Inside | 1 | Cortex | 41.9 | 5.94E-05 |
Chr7: 135,726,079–135,727,791 | Slc38a4 | Inside | 2 | Cortex | 53.9 | 6.43E-05 |
Chr6: 27,470,991–27,473,392 | Ncoa1 | Inside | 0.2 kb | Liver | 44.5 | 7.42E-05 |
Chr7: 27,505,278–27,507,777 | Anks1b | 5′ Overlap | 1 | Liver | 50.6 | 7.92E-05 |
Chr2: 104,430,837–104,432,642 | Pde7a | 1.0 kb 5′ | 1 | Liver | 54.7 | 8.41E-05 |
Chr10: 56,586,885–56,588,600 | Amac1 | 4.6 kb 5′ | 1 | Liver | 41.6 | 8.91E-05 |
Chr15: 33,195,773–33,197,808 | Zfhx2 | Inside | 3 | Liver | 49.0 | 9.90E-05 |
Chr13: 50,023,990–50,025,760 | Nr5a2 | Inside | 3.6 kb | Cortex | 45.9 | 0.00010 |
Numbers in the CpG Islands column indicate either the number of CpG islands that overlap the DMR, or if zero, the distance to the closest CpG island. Due to the low number of samples for liver (N = 4), FDR values were not calculated. Gene names marked in bold indicate genes annotated in the UCSC Genome Browser only for the human and mouse, but presumed to exist in the rat.