Table 2.
chr | physical location | SNP | max NPL | NPL exact p-value | left physical location | right physical location |
---|---|---|---|---|---|---|
1 | 158,235,632 | rs6676862 | 1.6120 | 0.0556 | 157,007,286 | 158,871,097 |
2 | 1,657,741 | rs7560004 | 1.9369 | 0.0283 | 1,443,268 | 4,151,604 |
3 | 178,984,865 | rs6764952 | 1.9355 | 0.0284 | 175,719,120 | 180,045,647 |
4 | 7,375,903 | rs4689705 | 1.1218 | 0.1320 | 6,691,863 | 7,852,481 |
5 | 103,137,679 | rs320654 | 1.8552 | 0.0338 | 89,093,506 | 124,487,446 |
6 | 22,393,991 | rs1205961 | 2.0998 | 0.0195 | 22,382,745 | 23,359,338 |
7 | 100,639,893 | rs1468358 | 1.4495 | 0.0755 | 100,151,356 | 101,310,585 |
8 | 72,212,959 | rs1481812 | 1.1769 | 0.1209 | 72,179,731 | 78,848,596 |
9 | 1,901,291 | rs10811102 | 1.6935 | 0.0473 | 1,381,887 | 2,049,341 |
10 | 37,456,382 | rs1878249 | 1.2281 | 0.1111 | 1,050,218 | 33,053,017 |
11 | 122,434,697 | rs11551598 | 1.7056 | 0.0461 | 122,356,773 | 123,153,543 |
12 | 24,344,720 | rs565934 | 2.0733 | 0.0208 | 2,152,566 | 25,405,864 |
13 | 105,045,125 | rs10508158 | 1.5536 | 0.0622 | 101,097,159 | 114,108,121 |
14 | 19,946,093 | rs1760897 | 1.5150 | 0.0669 | 19,536,664 | 93,349,018 |
15 | 41,144,698 | rs12050604 | 1.5787 | 0.0593 | 37,598,478 | 41,154,373 |
16 | 86,488,782 | rs8058389 | 1.4061 | 0.0817 | 84,489,852 | 87,500,055 |
17 | 42,504,408 | rs4074249 | 3.3913 | 0.0005 | 33,196,340 | 45,510,424 |
18 | 75,238,190 | rs1110784 | 2.4501 | 0.0082 | 73,651,628 | 76,085,595 |
19 | 2,561,822 | rs8104096 | 1.0822 | 0.1404 | 5,495,085 | 54,286,819 |
20 | 2,051,264 | rs6075668 | 1.3404 | 0.0918 | 16,749 | 3,398,635 |
21 | 45,595,912 | rs2838891 | 0.5032 | 0.3048 | 42,200,186 | 46,852,308 |
22 | 26,003,211 | rs134806 | 1.1607 | 0.1240 | 15,873,708 | 33,555,460 |
NOTE: chr, chromosome; physical location, the physical location at which maximum NPL score was observed; SNP, rs number of the SNP at which maximum NPL score was observed; max NPL, maximum NPL score obtained; NPL exact p-value, the exact p-value associated with maximum NPL score from Allegro; left physical location and right physical location, boundaries based on 1-LOD drop (approximating 95% confidence interval for the location of peak.