Table 3.

The absent and divergent genes in two novel sequence types (ST) of S. Typhi compared to S. Typhi Ty2

	Novel sequence types
	ST890	ST892
Absent genes	t2648, t2649, t2650, t2651, t2652, t2653, t2654, t2655, t2656	t1134, t1135, t1137, t1141, t1151, t1691, t2648, t2649, t2650, t2651, t2652, t4259, t4260, t4261, t4263, t4264, t4265, t4266, t4268, t4269, t4270, t4271, t4273, t4274, t4275, t4281, t4282, t4283, t4284, t4286, t4289, nucD, nucE, t4317, t4318, t4319, t4320, t4321
Variably present genes	t3052, t3053, rpsO, ftsH, ftsJ, mreB, rhlB, rplJ, rplA, rplK, rplJ, rplA, atpB, atpH, atpA, atpG, atpC, t4354, t4355	pilL, pilM, pilO, pilP, pilT, pilU, t4326, t4326, t4328, t4329, t4330, t4331, t4332, t4333, t4334, vexE, vexD, vexC, vexA, tviE, tviD, tviB, t4354, t4355, t4356, t4357, t4358, t4359, t4361, t4363, t4366