Figure 2.

Comparison of ScerTF recommended weight matrices with JASPAR weight matrices. Count matrices from JASPAR were converted to weight matrices as described in Ref. (9). Each matrix was used to predict which promoters should be bound by a TF and which promoters should not be bound. Predictions were compared with results from ChIP-chip experiments as reported by Harbison et al. (4) and gene deletion experiments as reported by Reimand et al. (13) using the Fisher's Exact test.