Table 1.
A list of web-based PubChem services for the BioAssay resource
| Service | Description | URL example |
|---|---|---|
| BioActivity Analysis Services | Home page for bioactivity data analysis services | http://pubchem.ncbi.nlm.nih.gov/assay/ |
| BioAssay Summary | BioAssay summary page for a given AID | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=myAID |
| BioAssay Data Table (concise view) | Concise data table for a given AID. The table includes SID,CID, structure, bioactivity outcome, score and active concentration value if available | |
| Bioassay Data Table (complete view) | Complete data table for given AID, including all deposited test results | |
| BioAssay Test Results Selection | Select/search bioassay test results | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?q=t&aid=myAID |
| BioAssay Search | Search BioAssay Database with Entrez | http://www.ncbi.nlm.nih.gov/pcassay/ |
| BioAssay Search, Limits page | An interface for constructing an Entrez query | http://www.ncbi.nlm.nih.gov/pcassay/limits |
| BioAssay Search, Advanced Page | An interface for reviewing search history and combining search results | http://www.ncbi.nlm.nih.gov/pcassay/advanced |
| PubChem Deposition Gateway | Chemical structure and bioassay submission tool | http://pubchem.ncbi.nlm.nih.gov/deposit |
| BioActivity Summary—Assay-centric | BioActivity Summary presented from the assay point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary—Compound-centric | BioActivity Summary presented from the compound point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary—Target-centric | BioActivity Summary presented from the target point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary | BioActivity information for a single SID or CID | |
| Structure–Activity Analysis (SAR) | Structure–Activity relationship analysis and visualization in a heatmap-style display. | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=heat |
| Related BioAssays | Related BioAssays by: Activity Overlap, Target Similarity, Deposited Annotation, Same Publication, or Common BioSystems. | http://pubchem.ncbi.nlm.nih.gov/assay/assayHeatmap.cgi?service=assayneighbor&aid=myAID |
| Scatter Plot/Histogram | BioAssay test results plotting functions | http://pubchem.ncbi.nlm.nih.gov/assay/plot.cgi?plottype=2 |
| Dose–response curve | Draw dose–response curves for confirmatory assays containing dose–response data points | http://pubchem.ncbi.nlm.nih.gov/assay/plot.cgi?plottype=1 |
| Bioassay download | Assay data download service | http://pubchem.ncbi.nlm.nih.gov/assay/assaydownload.cgi |