Table 2.
Residue and sequence coverage of a number of complete proteomes in Pfam 26.0
| Species | Sequence coverage (%) | Amino acid coverage (%) |
|---|---|---|
| Archaea | ||
| Methanococcus vannielii (strain SB/ATCC 35089) | 86.7 | 65.9 |
| Methanosphaera stadtmanae (strain DSM 3091) | 80.8 | 56.3 |
| Thermofilum pendens (strain Hrk 5) | 73.1 | 54.7 |
| Bacteria | ||
| Bacillus subtilis | 85.7 | 67.8 |
| Escherichia coli (strain MG1655) | 93.4 | 71.8 |
| Helicobacter pylori (strain HPAG1) | 80.4 | 60.3 |
| Pseudomonas aeruginosa (strain UCBPP-PA14) | 87.6 | 66.2 |
| Salmonella typhi (strain CT18) | 85.7 | 68.3 |
| Staphylococcus aureus (strain MW2) | 85.5 | 68.6 |
| Streptococcus pyogenes (strain MGAS9429) | 81.9 | 67.4 |
| Thermus thermophilus (strain HB8) | 84.0 | 64.5 |
| Yersinia pestis (strain Pestoides F) | 89.0 | 67.7 |
| Eukaryota | ||
| Anopheles gambiae | 77.9 | 42.8 |
| Arabidopsis thaliana | 75.3 | 43.9 |
| Caenorhabditis elegans | 67.2 | 40.2 |
| Danio rerio | 85.1 | 45.8 |
| Dictyostelium discoideum (strain AX4) | 60.4 | 28.7 |
| Drosophila melanogaster (strain Berkeley) | 74.3 | 38.0 |
| Gallus gallus | 79.7 | 45.6 |
| Homo sapiens | 69.7 | 44.4 |
| Leishmania braziliensis | 55.2 | 21.7 |
| Mus musculus | 73.9 | 44.1 |
| Paramecium tetraurelia | 54.6 | 24.8 |
| Saccharomyces cerevisiae (strain ATCC 204508) | 81.6 | 44.2 |
| Schizosaccharomyces pombe (strain ATCC 38366) | 88.3 | 48.5 |
| Toxoplasma gondii (strain RH) | 57.3 | 19.1 |
| Tetraodon nigroviridis | 70.2 | 42.0 |