Figure 2.

Definition of gene hits at GABI-Kat. (a) For protein-coding genes with annotated UTR-regions in TAIRv10, we differentiate between CDSi hits (insertion position between ATG and STOP), 5′- and 3′-TS2TE hits (insertion position in the 5′- or 3′-UTR) and promoter hit [insertion position up to 300-bp upstream of transcription start (TS)]. (b) If the UTR is not annotated in TAIRv10 (and for pseudogenes), insertion positions 300-bp up or downstream of ATG and STOP are considered as 5′- and 3′-hits. (c) For RNA genes and transposable elements, TS2TE hits are annotated, if the insertion is located between TS and transcript end.