Table 3.

QTLs detected on the consensus STK×GS map by MQM mapping for the number of inflorescences, the number of fruit harvested, and the mass of fruit harvested phenotyped over 6 years-in the STK×GS apple progeny. For trait abbreviations, see Table 2.

QTLs	LG	LOD	R2	Cofactor	Allelic effect	Af	Am	D	Parental map detection
BBI_inf	4	5.31***	0.157	Hi04c10x_SG	Af	0.039	–0.006	–0.008	STK
	8	4.33**	0.120	Hi04b12_S	Af	–0.027	–0.013	–0.018	STK
	10	4.63**	0.135	MdGA2ox8a_G	Am, D	0.013	0.032	0.023
Y_inf_2	15	6.11***	0.229	NZ02b01_S	Af, Am, D	9.46	–9.30	6.31	STK/GS
Y_inf_3	1	5.18***	0.197	MdGA20ox1a_S	Am	1.958	16.13	–2.149	STK
Y_inf_6	1	4.51**	0.136	MdGA20ox1a_S	Am	–7.57	–38.2	6.46	STK
	8	5.55***	0.185	Hi04b12_S	Af, Am, D	35.0	26.7	11.96	STK
Y_inf	15	6.03***	0.226	NZ02b01_S	Af, Am, D	–19.3	19.0	–13.2	STK/GS
CY_inf	15	6.35***	0.240	NZ02b01_S	Af, Am, D	–117	103	–71	STK/GS
PI_inf	3	4.51**	0.128	NZmsMdMYB12_S	Am, D	0.005	0.013	–0.010
	7	4.77**	0.145	MdSOC1b_S	Af, Am, D	0.014	–0.011	0.002
	10	4.12**	0.104	MS06g03_G	Am	0.001	0.017	0.002
BBI_fruit	10	5.16***	0.184	MdAFB6_S	Am	0.027	0.052	0.023	GS
	13	4.87***	0.148	CH03h03z_SG	Af, Am, D	0.021	–0.004	–0.045	GS
Y_fruit_2	1	4.19**	0.140	MdGA20ox1a_S	Af, Am, D	1.471	–3.662	1.914	STK/GS
	8	4.03**	0.124	MdPI_SG	Af, Am, D	2.417	3.373	–1.674	STK
Y_fruit_3	5	4.43**	0.144	CH04e03_SG	Af, D	–4.477	0.112	2.280
	11	5.46***	0.162	GD_SNP01140_SG	Af, Am, D	–3.330	4.330	–2.869
Y_fruit_5	1	3.71*	0.134	MdSOC1-like_G	Af, Am, D	–3.674	5.513	–7.144
Y_fruit_7	8	4.84**	0.176	MdPI_SG	Af, Am, D	–12.52	–13.51	6.064	STK
Y_fruit	1	4.35**	0.144	MdGA20ox1a_S	Af, Am, D	–4.682	11.80	–6.186	STK/GS
	8	4.06*	0.123	MdPI_SG	Af, Am, D	–8.017	–10.40	5.481	STK
CY_fruit	1	5.91***	0.191	MdGA3ox_like_b_S	Af, Am, D	–49.00	99.7	–51.43	STK/GS
	8	5.07**	0.157	MdPI_SG	Af, Am, D	–62.98	–83.53	50.44	STK
PI_fruit	3	5.46***	0.154	CH03g07_SG	D	0.001	0.003	–0.012
	5	5.37***	0.170	CH03a04_S	Af, D	–0.010	0.003	0.007
	11	4.80**	0.163	NZ04h11y_G	Am	0.002	0.011	–0.005
BBI_mass	10	4.18**	0.144	MdAFB6_S	Af, Am, D	0.030	0.045	0.016
	13	4.89***	0.160	CH03h03z_SG	Af, D	0.021	–0.003	–0.049
Y_mass_3	1	4.92**	0.179	B2-T7_S	Am	–0.088	0.363	–0.063
	5	4.96**	0.151	CH02a08z_S	Af	–0.314	0.076	0.103
Y_mass_7	2	3.78*	0.161	NH033b_SG	Am	–0.013	0.818	0.181
PI_mass	3	4.96**	0.154	CH03g07_SG	D	0.001	0.004	–0.013
	5	4.74**	0.156	CH03a04_S	Af	–0.011	0.005	0.007
	11	4.28*	0.143	NZ04h11y_G	Am	0.000	0.013	–0.004
NFI	8	4.64**	0.215	MdPI_SG	Af, Am, D	–0.057	–0.155	0.038	STK
NSF	3	7.33***	0.210	CH03e03_SG	Af, Am, D	–0.406	0.640	–0.395
	3	5.14***	0.148	MdCENa_S	Af, Am, D	0.603	–0.245	–0.228
	17	5.42***	0.179	MS06g03_G	Af, Am	0.575	–0.446	–0.115
NSI	3	5.54***	0.154	NZmsMdMYB12_S	Af, Am, D	0.071	1.120	–0.664
	3	4.03**	0.102	MdCENa_S	Af, D	0.788	–0.360	0.782
	10	4.48**	0.155	MS06g03_G	Am, D	0.354	–1.311	–1.807
	17	6.38***	0.191	MdLD_G	Af, Am	1.047	–1.016	–0.237