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. 2011 Jun 16;6(1):223–226. doi: 10.1038/ismej.2011.79

Figure 1.

Figure 1

Comparison of cupin-like regions of DddL, DddQ and DddW polypeptides. The sequences of the predicted cupin-like motifs of the DddW polypeptides of Ruegeria pomeroyi DSS-3 and Roseobacter sp. MED193 were compared with those of the DddL DMSP lyases of Sulfitobacter sp. EE-36 and Rhodobacter sphaeroides 2.4.1 and the DddQ-type lyases of Ruegeria pomeroyi DSS-3 and Roseovarius nubinhibens ISM. Corresponding gene numbers are underlined. The highly conserved residues in cupins (Dunwell et al., 2004) are indicated in single-letter code above the comparisons. Residues highlighted in black, dark gray or light gray indicate 100%, >80% or >60% conservation, respectively.