Table 2. Pathway analysis for all genes and the gene subgroups.
Set | SUMSTAT | SUMSQ |
All genes | 0.0020 | 0.0032 |
Anergy | 0.1378 | 0.1548 |
Costim. | 0.1022 | 0.1556 |
Treg | 0.0874 | 0.0812 |
Secreted | 0.0004 | 0.0004 |
tDC | 0.0060 | 0.0082 |
Empirical p-values established by 5000 in-cluster (GenoMEL regional group) label permutations are shown for the pathway statistics SUMSTAT and SUMSQ. Nominally significant results are shown in italics.