Table 3.
Coefficients of correlation showing the interdependence between the prediction performances for various structural features.
MAE (tASA) | MAE (scASA) | MAE (npASA) | MAE (Phi) | MAE (Psi) | MAE (Kappa) | MAE (Alpha) | AUC (HHC) | |
---|---|---|---|---|---|---|---|---|
MAE (tASA) | 1 | 0.93 | 0.88 | 0.09 | 0.1 | 0.1 | 0.11 | 0.19 |
MAE (scASA) | 0.93 | 1 | 0.93 | 0.07 | 0.08 | 0.07 | 0.06 | 0.21 |
MAE (npASA) | 0.88 | 0.93 | 1 | 0.07 | 0.08 | 0.07 | 0.07 | 0.2 |
MAE (Phi) | 0.09 | 0.07 | 0.07 | 1 | 0.46 | 0.35 | 0.42 | -0.03 |
MAE (Psi) | 0.1 | 0.08 | 0.08 | 0.46 | 1 | 0.41 | 0.47 | -0.05 |
MAE (Kappa) | 0.1 | 0.07 | 0.07 | 0.35 | 0.41 | 1 | 0.76 | -0.05 |
MAE (Alpha) | 0.11 | 0.06 | 0.07 | 0.42 | 0.47 | 0.76 | 1 | -0.04 |
AUC (HHC) | 0.19 | 0.21 | 0.2 | -0.03 | -0.05 | -0.05 | -0.04 | 1 |
The prediction performance for the ASA features is highly correlated with each other. The prediction performance for some conformational angles (e.g., alpha and kappa) is well-correlated, whereas others (e.g., Phi and Kappa) are only weakly correlated.
MAE: Mean absolute error (% ASA or degrees), AUC: Area under the ROC curve; HHC: helix-helix contact.