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. 2011 Dec 28;6(12):e28485. doi: 10.1371/journal.pone.0028485

Table 3. Key genes (Degree≥5) of Signal-Net.

Gene Gene product Expression Betweenness centralitya Degree Inb Outc
Mapk3 mitogen-activated protein kinase 3 down 2.28E–02 12 8 6
Traf6 TNF receptor-associated factor 6 up 7.62E–03 9 2 8
Ptpn6 protein tyrosine phosphatase, non-receptor type 6 down 0 8 0 8
Jak1 Janus kinase 1 up 9.90E–04 8 7 1
Calm2 calmodulin 2 down 9.50E–03 7 6 5
Chuk conserved helix-loop-helix ubiquitous kinase up 1.88E–03 6 4 2
Itgb2 integrin beta 2 up 1.98E–04 5 4 2
Kras v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog down 1.11E–02 5 4 1
Pip5k1c phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma up 1.39E–03 5 3 5
Irf7 interferon regulatory factor 7 down 2.57E–03 5 5 2

aBetweenness Centrality represents the gene's mediate ability, and Degree represents the number of gene–gene interactions.

b,cIn and out (Indegree and Outdegree) represent the gene regulation numbers upstream and downstream.