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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Oct 22;67(Pt 11):o3015. doi: 10.1107/S1600536811042826

Benzyl (E)-3-(2-bromo-5-meth­oxy­benzyl­idene)dithio­carbazate

Zheng Fan a, Yan-Lan Huang b, Zhao Wang b, Han-Qi Guo b, Shang Shan b,*
PMCID: PMC3247414  PMID: 22220032

Abstract

The title compound, C16H15BrN2OS2, was obtained from the condensation reaction of benzyl dithio­carbazate and 2-bromo-5-meth­oxy­lbenzaldehyde. In the mol­ecule, the bromo­meth­oxy­phenyl ring and dithio­carbazate fragment are located on the opposite sides of the C=N double bond, showing the E conformation. The dithio­carbazate fragment is approximately planar (r.m.s deviation 0.0187 Å); its mean plane is oriented with respect to the bromo­meth­oxy­phenyl and phenyl rings at 7.60 (12) and 60.08 (9)°, respectively. In the crystal, inversion dimers linked by pairs of N—H⋯S hydrogen bonds occur. A short Br⋯Br contact of 3.5526 (12) Å is observed in the crystal structure.

Related literature

For the potential application of hydrazone and its derivatives in the biological field, see: Okabe et al. (1993); Hu et al. (2001). For related structures, see: Shan et al. (2008a ,b ). For the synthesis, see: Hu et al. (2001).graphic file with name e-67-o3015-scheme1.jpg

Experimental

Crystal data

  • C16H15BrN2OS2

  • M r = 395.33

  • Triclinic, Inline graphic

  • a = 6.260 (3) Å

  • b = 11.889 (5) Å

  • c = 12.235 (5) Å

  • α = 111.931 (5)°

  • β = 91.725 (4)°

  • γ = 99.771 (4)°

  • V = 828.1 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 2.74 mm−1

  • T = 294 K

  • 0.32 × 0.28 × 0.19 mm

Data collection

  • Rigaku R-AXIS RAPID IP diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.56, T max = 0.72

  • 5637 measured reflections

  • 2988 independent reflections

  • 2379 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.034

  • wR(F 2) = 0.069

  • S = 1.02

  • 2988 reflections

  • 201 parameters

  • H-atom parameters constrained

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: PROCESS-AUTO (Rigaku, 1998); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042826/xu5353sup1.cif

e-67-o3015-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042826/xu5353Isup2.hkl

e-67-o3015-Isup2.hkl (143.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042826/xu5353Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯S1i 0.86 2.56 3.402 (3) 167

Symmetry code: (i) Inline graphic.

Acknowledgments

The work was supported by the Natural Science Foundation of Zhejiang Province, China (grant No. M203027).

supplementary crystallographic information

Comment

Hydrazone and its derivatives have shown the potential application in the biological field (Okabe et al., 1993; Hu et al., 2001). As part of the ongoing investigation on anti-cancer compounds, the title compound has recently been prepared in our laboratory and its crystal structure is presented here.

In the molecules, the methoxylphenyl ring and dithiocarbazate fragment are located on the opposite sides of the C═N double bond, showing the E-configuration. The dithiocarbazate fragment is approximately planar [r.m.s deviation 0.0187 Å]; the mean plane of dithiocarbazate is oriented with respect to the methoxylphenyl and phenyl rings at 7.60 (12) and 60.08 (9)°, similar to those found in related structures (Shan et al. 2008a, 2008b). Intermolecular N—H···S hydrogen bonding is observed in the crystal structure (Table 1). The short Br···Bri contact of 3.5526 (12) Å is also present in the crystal structure [symmetry code: (i) 1-x,-y,-z].

Experimental

Benzyl dithiocarbazate was synthesized as described previously (Hu et al., 2001). Benzyl dithiocarbazate (0.40 g, 2 mmol) and 2-bromo-5-methoxybenzaldehyde (0.43 g, 2 mmol) were dissolved in ethanol (20 ml), then acetic acid (0.2 ml) was added to the ethanol solution with stirring. The mixture solution was refluxed for 6 h. After cooling to room temperature, microcrystals appeared. The microcrystals were separated from the solution and washed with cold water three times. Recrystallization was performed twice with absolute methanol to obtain colourless single crystals of the title compound.

Refinement

H atoms were placed in calculated positions with C—H = 0.93–0.97 Å and N—H = 0.86 Å, and refined in riding mode with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C,N) for the others.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with 30% probability displacement (arbitrary spheres for H atoms).

Crystal data

C16H15BrN2OS2 Z = 2
Mr = 395.33 F(000) = 400
Triclinic, P1 Dx = 1.586 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.260 (3) Å Cell parameters from 2988 reflections
b = 11.889 (5) Å θ = 3.3–25.2°
c = 12.235 (5) Å µ = 2.74 mm1
α = 111.931 (5)° T = 294 K
β = 91.725 (4)° Block, yellow
γ = 99.771 (4)° 0.32 × 0.28 × 0.19 mm
V = 828.1 (6) Å3

Data collection

Rigaku R-AXIS RAPID IP diffractometer 2988 independent reflections
Radiation source: fine-focus sealed tube 2379 reflections with I > 2σ(I)
graphite Rint = 0.028
Detector resolution: 10.0 pixels mm-1 θmax = 25.2°, θmin = 3.3°
ω scans h = −5→7
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −14→11
Tmin = 0.56, Tmax = 0.72 l = −14→14
5637 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034 H-atom parameters constrained
wR(F2) = 0.069 w = 1/[σ2(Fo2) + (0.0276P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max < 0.001
2988 reflections Δρmax = 0.25 e Å3
201 parameters Δρmin = −0.30 e Å3
0 restraints Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0123 (11)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br 0.33444 (5) 0.11365 (3) 0.04397 (2) 0.05700 (14)
S1 1.10460 (10) 0.70610 (6) 0.10224 (6) 0.0458 (2)
S2 0.72189 (10) 0.76733 (6) 0.24288 (6) 0.0423 (2)
N1 0.5742 (3) 0.51783 (19) 0.15272 (15) 0.0336 (5)
N2 0.7654 (3) 0.54749 (19) 0.10904 (16) 0.0356 (5)
H2 0.8197 0.4905 0.0580 0.043*
O1 −0.0891 (3) 0.51964 (18) 0.35686 (15) 0.0501 (5)
C1 0.1988 (4) 0.2431 (2) 0.13964 (19) 0.0366 (6)
C2 0.0116 (5) 0.2108 (3) 0.1861 (2) 0.0487 (8)
H2A −0.0459 0.1278 0.1682 0.058*
C3 −0.0907 (4) 0.2999 (3) 0.2586 (2) 0.0465 (7)
H3 −0.2169 0.2778 0.2900 0.056*
C4 −0.0045 (4) 0.4226 (3) 0.2843 (2) 0.0370 (6)
C5 0.1811 (4) 0.4548 (2) 0.23569 (19) 0.0341 (6)
H5 0.2356 0.5378 0.2518 0.041*
C6 0.2875 (4) 0.3660 (2) 0.16346 (19) 0.0314 (6)
C7 0.4884 (4) 0.4042 (2) 0.11732 (19) 0.0356 (6)
H7 0.5525 0.3453 0.0623 0.043*
C8 0.8663 (4) 0.6654 (2) 0.14642 (18) 0.0319 (6)
C9 0.8899 (4) 0.9158 (2) 0.2670 (2) 0.0414 (7)
H9A 1.0306 0.9241 0.3078 0.050*
H9B 0.9132 0.9233 0.1918 0.050*
C10 0.7736 (4) 1.0146 (2) 0.3410 (2) 0.0380 (6)
C11 0.5706 (5) 1.0236 (3) 0.3006 (2) 0.0489 (8)
H11 0.5048 0.9677 0.2267 0.059*
C12 0.4647 (5) 1.1145 (3) 0.3690 (3) 0.0587 (8)
H12 0.3299 1.1210 0.3404 0.070*
C13 0.5599 (6) 1.1955 (3) 0.4797 (3) 0.0624 (9)
H13 0.4869 1.2552 0.5269 0.075*
C14 0.7606 (6) 1.1886 (3) 0.5205 (2) 0.0636 (9)
H14 0.8250 1.2441 0.5948 0.076*
C15 0.8682 (5) 1.0989 (3) 0.4509 (2) 0.0487 (7)
H15 1.0059 1.0953 0.4786 0.058*
C16 −0.2653 (5) 0.4938 (3) 0.4202 (2) 0.0604 (9)
H16A −0.3916 0.4475 0.3655 0.091*
H16B −0.2973 0.5700 0.4744 0.091*
H16C −0.2260 0.4464 0.4636 0.091*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br 0.0715 (2) 0.03141 (19) 0.0601 (2) 0.01393 (14) 0.01395 (15) 0.00643 (14)
S1 0.0383 (4) 0.0355 (4) 0.0532 (4) 0.0005 (3) 0.0211 (3) 0.0069 (3)
S2 0.0413 (4) 0.0289 (4) 0.0511 (4) 0.0051 (3) 0.0214 (3) 0.0084 (3)
N1 0.0292 (10) 0.0319 (13) 0.0367 (10) 0.0026 (9) 0.0078 (9) 0.0109 (9)
N2 0.0333 (11) 0.0297 (13) 0.0390 (11) 0.0034 (9) 0.0146 (9) 0.0083 (9)
O1 0.0423 (11) 0.0511 (13) 0.0580 (11) 0.0155 (9) 0.0225 (9) 0.0181 (9)
C1 0.0422 (15) 0.0286 (15) 0.0355 (13) 0.0030 (12) 0.0031 (11) 0.0101 (11)
C2 0.0553 (17) 0.0332 (17) 0.0505 (15) −0.0061 (14) 0.0095 (14) 0.0140 (13)
C3 0.0389 (15) 0.0474 (19) 0.0507 (15) −0.0051 (13) 0.0116 (13) 0.0214 (14)
C4 0.0309 (13) 0.0432 (17) 0.0362 (13) 0.0080 (12) 0.0038 (11) 0.0142 (12)
C5 0.0311 (13) 0.0265 (14) 0.0412 (13) 0.0006 (11) 0.0028 (11) 0.0113 (11)
C6 0.0302 (13) 0.0300 (15) 0.0313 (11) 0.0030 (11) 0.0013 (10) 0.0102 (10)
C7 0.0378 (14) 0.0294 (15) 0.0347 (12) 0.0050 (11) 0.0092 (11) 0.0070 (11)
C8 0.0327 (13) 0.0329 (15) 0.0276 (11) 0.0047 (11) 0.0044 (10) 0.0096 (10)
C9 0.0414 (15) 0.0293 (15) 0.0476 (14) 0.0016 (12) 0.0134 (12) 0.0097 (12)
C10 0.0443 (15) 0.0262 (15) 0.0444 (14) 0.0047 (12) 0.0165 (12) 0.0146 (12)
C11 0.0441 (16) 0.0421 (18) 0.0547 (16) 0.0045 (13) 0.0117 (13) 0.0133 (13)
C12 0.0470 (17) 0.054 (2) 0.084 (2) 0.0160 (15) 0.0236 (17) 0.0319 (18)
C13 0.085 (2) 0.043 (2) 0.068 (2) 0.0282 (17) 0.0390 (19) 0.0228 (16)
C14 0.102 (3) 0.0402 (19) 0.0437 (16) 0.0218 (18) 0.0107 (17) 0.0072 (14)
C15 0.0603 (18) 0.0353 (17) 0.0466 (15) 0.0094 (14) 0.0060 (14) 0.0113 (13)
C16 0.0449 (16) 0.085 (3) 0.0553 (16) 0.0222 (16) 0.0221 (14) 0.0258 (16)

Geometric parameters (Å, °)

Br—C1 1.902 (3) C6—C7 1.465 (3)
S1—C8 1.658 (3) C7—H7 0.9300
S2—C8 1.745 (2) C9—C10 1.505 (4)
S2—C9 1.808 (3) C9—H9A 0.9700
N1—C7 1.267 (3) C9—H9B 0.9700
N1—N2 1.370 (3) C10—C15 1.381 (3)
N2—C8 1.333 (3) C10—C11 1.385 (4)
N2—H2 0.8600 C11—C12 1.382 (4)
O1—C4 1.368 (3) C11—H11 0.9300
O1—C16 1.424 (3) C12—C13 1.378 (4)
C1—C2 1.377 (4) C12—H12 0.9300
C1—C6 1.387 (4) C13—C14 1.365 (5)
C2—C3 1.372 (4) C13—H13 0.9300
C2—H2A 0.9300 C14—C15 1.384 (4)
C3—C4 1.378 (4) C14—H14 0.9300
C3—H3 0.9300 C15—H15 0.9300
C4—C5 1.382 (3) C16—H16A 0.9600
C5—C6 1.385 (3) C16—H16B 0.9600
C5—H5 0.9300 C16—H16C 0.9600
C8—S2—C9 101.87 (12) C10—C9—S2 107.86 (17)
C7—N1—N2 116.98 (19) C10—C9—H9A 110.1
C8—N2—N1 119.40 (18) S2—C9—H9A 110.1
C8—N2—H2 120.3 C10—C9—H9B 110.1
N1—N2—H2 120.3 S2—C9—H9B 110.1
C4—O1—C16 118.1 (2) H9A—C9—H9B 108.4
C2—C1—C6 121.2 (2) C15—C10—C11 118.5 (2)
C2—C1—Br 117.7 (2) C15—C10—C9 120.4 (2)
C6—C1—Br 121.16 (18) C11—C10—C9 121.0 (2)
C3—C2—C1 120.6 (3) C12—C11—C10 120.8 (3)
C3—C2—H2A 119.7 C12—C11—H11 119.6
C1—C2—H2A 119.7 C10—C11—H11 119.6
C2—C3—C4 119.3 (2) C13—C12—C11 119.7 (3)
C2—C3—H3 120.3 C13—C12—H12 120.2
C4—C3—H3 120.3 C11—C12—H12 120.2
O1—C4—C3 124.7 (2) C14—C13—C12 120.3 (3)
O1—C4—C5 115.2 (2) C14—C13—H13 119.8
C3—C4—C5 120.0 (2) C12—C13—H13 119.8
C4—C5—C6 121.3 (2) C13—C14—C15 119.9 (3)
C4—C5—H5 119.3 C13—C14—H14 120.1
C6—C5—H5 119.3 C15—C14—H14 120.1
C5—C6—C1 117.6 (2) C10—C15—C14 120.8 (3)
C5—C6—C7 119.6 (2) C10—C15—H15 119.6
C1—C6—C7 122.8 (2) C14—C15—H15 119.6
N1—C7—C6 119.7 (2) O1—C16—H16A 109.5
N1—C7—H7 120.1 O1—C16—H16B 109.5
C6—C7—H7 120.1 H16A—C16—H16B 109.5
N2—C8—S1 121.55 (17) O1—C16—H16C 109.5
N2—C8—S2 113.22 (17) H16A—C16—H16C 109.5
S1—C8—S2 125.23 (15) H16B—C16—H16C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2···S1i 0.86 2.56 3.402 (3) 167

Symmetry codes: (i) −x+2, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5353).

References

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  7. Rigaku (1998). PROCESS-AUTO Rigaku Corporation, Tokyo, Japan.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042826/xu5353sup1.cif

e-67-o3015-sup1.cif (16.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042826/xu5353Isup2.hkl

e-67-o3015-Isup2.hkl (143.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811042826/xu5353Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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