Table 2. Glycosylation prediction servers.
Server | Portable Version | Method | Description | URL |
NetNGlyc | Only for academics | ANN | N-glycosylation | http://www.cbs.dtu.dk/services/NetNGlyc/ |
EnsembleGly | No | SVM | N-glycosylation | http://turing.cs.iastate.edu/EnsembleGly/ |
EnsembleGly | No | SVM | O-glycosylation | http://turing.cs.iastate.edu/EnsembleGly/ |
EnsembleGly | No | SVM | C-glycosylation | http://turing.cs.iastate.edu/EnsembleGly/ |
GPP | No | RFM | N-glycosylation | http://comp.chem.nottingham.ac.uk/glyco/ |
GPP | No | RFM | O-glycosylation | http://comp.chem.nottingham.ac.uk/glyco/ |
NetOGlyc | Only for academics | ANN | O-glycosylation | http://www.cbs.dtu.dk/services/NetOGlyc/ |
Oglyc | No | SVM | O-glycosylation | http://www.biosino.org/Oglyc/ |
CKSAAP_OGlySite | No | SVM | O-glycosylation | http://bioinformatics.cau.edu.cn/zzd_lab/CKSAAP_OGlySite/ |
YinOYang | Only for academics | ANN | O-glycosylation | http://www.cbs.dtu.dk/services/YinOYang/ |
Big-PI | No | GPI anchor | http://mendel.imp.ac.at/gpi/gpi_server.html | |
GPI-SOM | Yes | ANN | GPI anchor | http://gpi.unibe.ch/ |
FragAnchor | No | ANN and HMM | GPI anchor | http://navet.ics.hawaii.edu/~fraganchor/NNHMM/NNHMM.html |
PredGPI | Only for academics upon request | HMM and SVM | GPI anchor | http://gpcr.biocomp.unibo.it/predgpi/ |
NetCGlyc | Only for academics | ANN | C-mannosylation | http://www.cbs.dtu.dk/services/NetCGlyc/ |
ANN, artificial neural network; SVM, support vector machine; RFM, random forest method; HMM, hidden Markov model.