Table 3.
Observed genotype variation within MsIsa across the weeping ricegrass population
| Base position in consensus sequence from all individuals |
|||||||
| Genotype | 30 | 99 | 126 | 129 | 199 | All samples (n = 95) | Samples from unique sites (n = 35) |
| 1 | C | C | G | T | C | 60.75 | 24.75 |
| 2 | T | C | G | T | C | 2 | 2 |
| 3 | C | A | G | G | C | 1.25 | 0.25 |
| 4 | C | A | G | C | C | 0.25 | 0.25 |
| 5 | C | C | G | T | C | 0.25 | 0.25 |
| 6 | C | C | G | C | C | 0.25 | 0.25 |
| 7 | C | C | A | T | C | 16.25 | 2.25 |
| 8 | C | C | G | T | T | 13.25 | 4.75 |
| 9 | C | C | A | T | T | 0.75 | 0.25 |
| Putative amino acid change | Syn | Pro to Glu* | Arg to His | Leu to Arg* | Syn | 63.9% predominant sequence | 70.7% predominant sequence |
Note that heterozygous individuals have been counted as a representative percentage of the individual for a given haplotype. Where two heterozygous positions were present in the same haplotype, all four resultant putative haplotypes were assigned 0.25 of an individual. Note that the column of samples from unique sites is a subset of the column of all samples.
*Change of amino acid structure is likely to affect protein formation.