Table 1. Wild Type-specific expression changes in T1 and T2.
| Upregulated | ||||
| Process | Gene/Locus | Description | ID | Group |
| photosynthesis | LHCSR3/Cre08.g367400 | stress-related LHC protein | 8770.D | 1 |
| LHCSR1/Cre08.g365900 | stress-related LHC protein | 251.A | 7 | |
| Cre07.g320450/Cre07.g320400 | CBR-like ELIP | 9621.E | 7 | |
| carbon metabolism | GWD2/Cre07.g332300 | R1 protein, α-glucan water dikinase | 1457.C | 9 |
| GND1 a/b/Cre12.g526800 | 6-phosphogluconate dehydrogenase | 337.A | 4 | |
| nitrogen metabolism | Cre11.g477200 | NmrA-like protein | 5077.C | 5 |
| AMT1;1/Cre03.g159254 | ammonium transporter | 199.A | 9 | |
| CO2 concentrating mechanism (CCM) | LCR1/Cre02.g136800 | low-CO2 inducible Myb transcription factor | 266.A | 7 |
| HLA3/Cre02.g097800 | Ci uptake | 21.A | 9 | |
| Amino acid metabolism: | OAT1/Cre11.g474800 | Ornithine transaminase | 6901.C | 5 |
| Lipid metabolism: | Cre01.g035350 | Trans-2-enoyl-CoA reductase | 1311.C | 7 |
| Nucleotide metabolism | Cre03.g184400 | NUDIX_Hydrolase_19 | 5676.C | 7 |
| Transport: | CCP2/Cre04.g222750 | putative mitochondrial carrier | 128.A | 7 |
| Metabolism of cofactors: | Cre08.g359700 | Lipoate synthase | 2624.C | 7 |
| Vesicular transport | Cre06.g289700 | TRAPP component | 8048.D | 7 |
| Transcription/Translation | Cre01.g031050 | SPT5 transcription elongation factor | 5127.C | 7 |
| Cre02.g102400 | DNA-directed RNA polymerase SU | 6049.C | 7 | |
| Cre12.g528900 | PUA like RNA binding protein | 3412.C | 9 | |
| Proteolyis | Cre16.g663350 | clp protease ATP-binding subunit | 4348.C | 7 |
| Cell division | Cre12.g519700 | YihA/EngB-like GTPase | 7786.D | 7 |
| Downregulated | ||||
| Transcription/Translation: | Cre02.g130150 | SAP-domain containing | 5599.C | 8 |
| Ca2+ homeostasis/signaling | ACA2/Cre12.g505350 | calcium-transporting ATPase | 4472.C | 8 |
List of genes showing either a specific down- or upregulation in one of both examined strains. Genes contained in the list displayed a 2fold down- or upregulation for at least one of the time points T1/T2. Differentially expressed genes are sorted according to the cellular processes involved as deduced from their functional annotation. Gene names are given along with the corresponding locus names (Phytozome 7.0; http://www.phytozome.net/) and a description of their function. Indicated gene IDs correspond to those given in the gal file (http://www.chlamy.org/galfile.xls/) for Chlamydomonas olinucleotide array v2.0 [50]. Heat map group assignments (Figure 4) for each gene are given as well.