The difference in assignment accuracy (MIAP) based on SNPs and haplotypes as a function of GIA, LD ( and ), and the difference between FST for haplotype loci and FST for SNPs (values are given in Table 2). A linear regression line is included for each comparison. (A) GIA, ρ = 0.748, y = 4.1x + 0.046 (P = 4 × 10−5); (B) , ρ = −0.302, y = −0.75x + 0.14 (P = 0.16); (C) , ρ = −0.289, y = −0.13x + 0.14 (P = 0.18); (D) FST(Haplotypes) − FST(SNPs), ρ = 0.790, y = 6.1x + 0.040 (P = 7 × 10−6).