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. Author manuscript; available in PMC: 2012 Jan 3.
Published in final edited form as: Pac Symp Biocomput. 2012:311–322.
Algorithm 2.1 Unlabelled Conformal Predictor in search of interactions
Input: training examples (known interactions) x1, x2,…, xlX
Input: a new example xl+1X
Input: unlabelled examples U = {xl+2, xr+2,…, xl+s+1} ⊂ X
Input: a confidence level γ
Input: a NCM A
for j in 1, 2,…, l + 1 do
  αj = A(xj, {x1,…, xl, xl+1},U)
end for
p=#{j=1,,l+1:αjαl+1}l+1
Output: xl+1 is predicted as a suspected interaction if p > 1 − γ.
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