Table 2. The Methylation and Expression datasets of five cancer types for concordance analysis.
Cancer type | Methylation# | Database | Expression# | Database |
Colon adenocarcinoma | C22 | TCGA | c23 | GSE4183 |
C44 | GSE17648 | c64 | GSE8671 | |
Kidney renal clear cell carcinoma | K78 | TCGA | k20 | GSE6344 |
K100 | TCGA | k34 | GSE15641 | |
Stomach adenocarcinoma | S24 | TCGA | NA | |
S94 | TCGA | |||
Lung adenocarcinoma | La8 | TCGA | la52 | GSE7670 |
La14 | TCGA | la107 | GSE10072 | |
Lung squamous cell carcinoma | Ls24 | TCGA | NA | |
Ls28 | TCGA | |||
Platform | Illumina HumanMethylation27 BeadChip | Affymetrix Human Genome U133 (GPL96,GPL570) |
Each dataset is denoted by the following nomenclature: initial character of the cancer type followed by the total number of samples of the dataset; NA, not available.