Table 3. Consistency of DM genes across different datasets for each cancer.
Dataset# | DM-S* | DM-L** | Overlap | POG12 $ | POG21 $$ | Consistency¥ |
C22–C44 | 2601 | 4001 | 2421 | 93.1% | 60.1% | 99.9% |
K78–K100 | 3778 | 3966 | 3443 | 91.1% | 86.8% | 100% |
La8–La14 | 752 | 1698 | 488 | 64.9% | 28.7% | 99.6% |
S24–S94 | 2274 | 4867 | 2210 | 97.2% | 45.4% | 100% |
Ls24–Ls28 | 2682 | 2909 | 2152 | 80.2% | 74.0% | 100% |
Each dataset was denoted by the following nomenclature: initial character of the cancer type followed by the total number of samples of the dataset.
*DM-S denotes DM genes from the shorter list;
**DM-L denotes DM genes from the longer list.
POG12 denotes the score from the shorter list to the longer list;
POG21 denotes the score from the longer list to the shorter list.
Consistency denotes the percentage of overlapping genes which showed the same methylation directions across the two datasets.