Table II. Mid-term and long-term gene expression changes.
Total numbers of differentially expressed genes in roots and shoots for each comparison are given. Genes were classified as “all” differentially expressed and as “specific” differentially expressed genes for the given comparison. These data are presented as a Venn diagram in Supplemental Figure S6.
| Organ | Roots |
Shoots |
||||||||||
| Comparison | 0 to 2 d |
2 to 10 d |
0 to 10 d |
0 to 2 d |
2 to 10 d |
0 to 10 d |
||||||
| Expression | All | Specific | All | Specific | All | Specific | All | Specific | All | Specific | All | Specific |
| Up-regulated genes | 62 | 7 | 162 | 16 | 275 | 103 | 92 | 17 | 274 | 22 | 314 | 40 |
| Down-regulated genes | 170 | 11 | 62 | 1 | 333 | 141 | 58 | 5 | 319 | 32 | 383 | 63 |
| Total | 232 | 18 | 224 | 17 | 608 | 244 | 150 | 22 | 603 | 54 | 697 | 103 |