Table I. Top-ranked direct SHR targets identified by ChIP-chip.
AGI, Arabidopsis Genome Initiative identification number; FC, fold change.
| Rank | AGI | No. of Probes | FC | Gene Annotation |
| 1 | AT1G03840a | 14 | 3.06 | MAGPIE (MGP) |
| 2 | AT1G50420a | 9 | 4.18 | SCARECROW-LIKE3 (SCL3) |
| 3 | AT2G46510b | 7 | 3.65 | ATAIB, bHLH transcription factor |
| 4 | AT1G68670b | 7 | 2.98 | MYB family transcription factor |
| 5 | AT5G62000b | 5 | 3.96 | ARF2, transcription factor B3 family protein |
| 6 | AT1G24120 | 4 | 3.65 | ARG-like protein |
| 7 | AT2G28550 | 4 | 3.2 | TOE1, AP2 domain-containing transcription factor |
| 8 | AT4G01720 | 4 | 3.07 | WRKY47 |
| 9 | AT4G25560 | 4 | 2.95 | MYB18 |
| 10 | AT3G02140 | 4 | 2.86 | TMAC2, TWO OR MORE ABRES-CONTAINING GENE2 |
| 11 | AT3G02150 | 4 | 2.86 | TCP transcription factor |
| 12 | AT5G44160a | 4 | 2.73 | NUTCRACKER (NUC) |
| 13 | AT2G03730 | 3 | 4.33 | ACT domain-containing protein (ACR5) |
| 14 | AT5G03150a | 3 | 3.33 | JACKDAW (JKD) |
| 15 | AT1G13260 | 3 | 3.18 | DNA-binding protein RAV1 (RAV1) |
| 16 | AT3G04570 | 3 | 2.94 | DNA-binding protein-related |
| 17 | AT3G50060 | 3 | 2.84 | MYB77 |
| 18 | AT3G61890 | 3 | 2.65 | AtHB12 |
| 19 | AT3G61897a | 3 | 2.65 | miR166B (targeting At1g52150 [HD-ZIP]) |
| 20 | AT2G36080 | 3 | 2.65 | RAV1/2 like DNA-binding protein |
| 21 | AT2G18160 | 3 | 2.55 | GBF5/bZIP2 transcription factor |
| 22 | AT5G44180 | 3 | 2.33 | Homeobox transcription factor |
| 23 | AT3G07360 | 2 | 3.61 | Armadillo/β-catein repeat family factor |
| 24 | AT5G05760 | 2 | 3.13 | SYP31 (syntaxin 31)/SED5 |
| 25 | AT5G05770b | 2 | 3.13 | WUSCHEL-RELATED HOMEOBOX7 (WOX7) |
| . . . | ||||
| 154 | AT3G54220a | 1 | 2.26 | SCR |
a
Previously identified SHR target.
b
Novel SHR target confirmed in this study.