Table 3. Human lung tumor data sets used in the correlation and GSEA studies.
GSEA p values | |||||
Set | PMID | Number of tumors | Cell type | E11.5/E11.5* | E19.5/E18* |
GSE12667 | 18948947 | 75 | Adenocarcinoma | 0.017 | 0.003 |
GSE10245 | 18486272 | 58 | All | <0.001 | <0.001 |
40 | Adenocarcinoma | 0.432 | 0.044 | ||
18 | Squamous | 0.034 | 0.062 | ||
GSE10799 | 19208797 | 16 | Adenocarcinoma | 0.228 | 0.222 |
GSE10445 | 19176396 | 72 | Adenocarcinoma | 0.024 | 0.005 |
Bild 2006 | 16273092 | 111 | All | <0.001 | <0.001 |
58 | Adenocarcinoma | <0.001 | <0.001 | ||
53 | Squamous | <0.001 | <0.001 | ||
GSE7670 | 17540040 | 27 | Adenocarcinoma | 0.124 | 0.821 |
Shedden DFCI 1 | 18641660 | 52 | Adenocarcinoma | <0.001 | 0.118 |
Shedden DFCI 2 | 30 | Adenocarcinoma | 0.772 | 0.155 | |
Shedden Moffitt | 79 | Adenocarcinoma | 0.02 | 0.118 | |
Shedden UMich | 178 | Adenocarcinoma | 0.009 | 0.001 | |
Shedden MSKCC | 104 | Adenocarcinoma | 0.043 | 0.18 | |
Lu U133A | 17194181 | 18 | Squamous | 0.003 | 0.005 |
Bhattacharjee 2001 | 11707567 | 254 | All | 0.001 | 0.054 |
197 | Adeno and Squamous only | <0.001 | <0.001 | ||
176 | Adenocarcinoma | 0.009 | 0.035 | ||
21 | Squamous | 0.063 | 0.002 | ||
Borczuk 2004 | 15087295 | 74 | All | 0.261 | 0.036 |
17 | Adeno and Squamous only | 0.592 | 0.183 | ||
10 | Adenocarcinoma | 0.457 | 0.626 | ||
7 | Squamous | 0.537 | 0.704 | ||
Lu U95Av2 | 17194181 | 36 | All | 0.771 | 0.125 |
32 | Adeno and Squamous only | 0.797 | 0.143 | ||
14 | Adenocarcinoma | 0.435 | 0.038 | ||
18 | Squamous | 0.961 | 0.717 | ||
Beer 2002 | 12118244 | 96 | Adenocarcinoma | 0.125 | 0.293 |
bold GSEA values <0.05.
Bound/Expressed.