Table 1.
Statistics based on a Maximum Parsimony Ratchet analysis showing the retention index as a measure of homoplasy.
| total characters (with indels) | Trees found (with indels) | Steps (with indels) | RI (with indels) | ||
|---|---|---|---|---|---|
| agt1 full sampling | coding | 1088 (1088) | 1253 (N/A) | 405 (N/A) | 0.827 (N/A) |
| non-coding | 1009 (1192) | 1721 (1539) | 978 (1205) | 0.799 (0.794) | |
| total | 2097 (2280) | 232 (362) | 1395 (1622) | 0.802 (0.798) | |
| agt1 reduced sampling | coding | 1088 (1088) | 206 (N/A) | 260 (N/A) | 0.742 (N/A) |
| non-coding | 856 (971) | 323 (55) | 613 (746) | 0.636 (0.628) | |
| total | 1944 (2059) | 50 (64) | 876 (1010) | 0.667 (0.658) | |
| matK-trnK-psbA full sampling | coding | 1609 (1621) | 158 (172) | 448 (461) | 0.882 (0.883) |
| non-coding | 1475 (1554) | 39 (85) | 422 (518) | 0.879 (0.877) | |
| total | 3085 (3174) | 1007 (1356) | 881 (990) | 0.874 (0.873) | |
| matK-trnK-psbA reduced sampling | coding | 1606 (1614) | 18 (15) | 303 (312) | 0.840 (0.383) |
| non-coding | 1310 (1361) | 9 (28) | 287 (343) | 0.837 (0.831) | |
| total | 2916 (2974) | 12 (21) | 587 (651) | 0.832 (0.828) | |
| ndhF-rpl32-trnL reduced sampling | coding | 362 (367) | 2 (2) | 58 (63) | 0.962 (0.964) |
| non-coding | 1668 (1783) | 10 (8) | 246 (382) | 0.822 (0.823) | |
| total | 2030 (2150) | 1 (65) | 305 (448) | 0.847 (0.836) | |
| psbA-trnH reduced sampling | coding | 29 (29) | 1 (N/A) | 2 (N/A) | 1.000 (N/A) |
| non-coding | 324 (370) | 810 (28) | 46 (100) | 0.727 (0.714) | |
| total | 353 (399) | 1044 (38) | 49 (103) | 0.696 (0.700) |