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. Author manuscript; available in PMC: 2013 Jan 6.
Published in final edited form as: J Org Chem. 2011 Nov 16;77(1):5–16. doi: 10.1021/jo201845z

Table 5.

Tm-values of duplexes between centrally modified ONs and complementary or centrally mismatched RNA targets.[a]


Tm (ΔTm) [°C]
Mismatch ΔTm [°C]
ON Sequence B= A C G U



2 5′-CGCAA CTC AACGC 51.5 −15.5 −3.0 −13.5
4 5′-CGCAA TTT AACGC 40.5 −19.0 −3.5 −17.0
6 5′-CGCAA CWC AACGC 47.0 (−4.5) +1.0 +0.0 +0.5
8 5′-CGCAA TWT AACGC 42.0 (+1.5) +3.0 +0.5 +1.5
12 5′-CGCAA TXT AACGC 38.0 (−2.5) +1.0 +0.0 +1.0
14 5′-CGCAA CYC AACGC 43.5 (−8.0) −2.0 −5.0 −4.0
16 5′-CGCAA TYT AACGC 36.0 (−4.5) +1.5 −1.0 −1.0
18 5′-CGCAA CZC AACGC 44.5 (−7.0) −3.0 −8.0 −7.0
20 5′-CGCAA TZT AACGC 36.5 (−4.0) −12.0 −7.5 −13.0
[a]

Conditions and definitions as described in footnote of Table 1. RNA targets: 3′-GCGUU GBG UUGCG (for ON2/ON6/ON14/ON18) and 3′-GCGUU ABA UUGCG (for ON4/ON8/ON12/ON16/ON20).