Table 5.
Tm-values of duplexes between centrally modified ONs and complementary or centrally mismatched RNA targets.[a]
|
Tm (ΔTm) [°C]
|
Mismatch ΔTm [°C]
|
||||
|---|---|---|---|---|---|
| ON | Sequence | B= A | C | G | U |
| 2 | 5′-CGCAA CTC AACGC | 51.5 | −15.5 | −3.0 | −13.5 |
| 4 | 5′-CGCAA TTT AACGC | 40.5 | −19.0 | −3.5 | −17.0 |
| 6 | 5′-CGCAA CWC AACGC | 47.0 (−4.5) | +1.0 | +0.0 | +0.5 |
| 8 | 5′-CGCAA TWT AACGC | 42.0 (+1.5) | +3.0 | +0.5 | +1.5 |
| 12 | 5′-CGCAA TXT AACGC | 38.0 (−2.5) | +1.0 | +0.0 | +1.0 |
| 14 | 5′-CGCAA CYC AACGC | 43.5 (−8.0) | −2.0 | −5.0 | −4.0 |
| 16 | 5′-CGCAA TYT AACGC | 36.0 (−4.5) | +1.5 | −1.0 | −1.0 |
| 18 | 5′-CGCAA CZC AACGC | 44.5 (−7.0) | −3.0 | −8.0 | −7.0 |
| 20 | 5′-CGCAA TZT AACGC | 36.5 (−4.0) | −12.0 | −7.5 | −13.0 |
Conditions and definitions as described in footnote of Table 1. RNA targets: 3′-GCGUU GBG UUGCG (for ON2/ON6/ON14/ON18) and 3′-GCGUU ABA UUGCG (for ON4/ON8/ON12/ON16/ON20).