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Clindamycin treatment depletes a broad range of microbial populations. Heat map showing the relative abundance of phylotypes (OTUs defined with 97% similarity) in the ileum (A, B, and C) and cecum (D, E, and F) over time following inoculation with 103 C. difficile spores (A and D), clindamycin administration (B and E), or clindamycin administration plus C. difficile inoculation (C and F).
