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. 2012 Jan;86(2):1166–1180. doi: 10.1128/JVI.05721-11

Table 7.

B*07:02 Gag epitopes identified in this study and binding motifsa

Binding motif Amino acid at indicated anchor position
P1 P2 P3 P4 P5 P6 P7 P8 P9
Previously defined motif X PVA X X X X X X FLM(AIVYW)
Epitopes identified in this study A P P A E I F G M
A P R K K G C W K
F P Q S R P E P T
G P G A T L E E M
G P G H K A R V L
G P I P P G Q M R
G P S H K A R V L
R A L G P G A T L
R L R P G G K K K
R P G N F P Q S R
S P R T L N A W V
T P Q D L N M M L
T P Q E Q I G W M
T P Q E Q L G W M
V R M Y S P V S I
W P S S K G R P G
Y P L V S L K S L
Y V D R F F K T L
G P G H K A R V L
G P S H K A R V L
K A R V L A E A M
Q V Q H T N I M M
Q A Q Q P N V M M
Q V N G N T A I M
Q A N A N T A I M
A T N A N A A I M
N I M M Q R G N F
N I M M Q R S N F
N V M M Q R S N F
A I M M Q R G N F
a

Bolded amino acids are additional residues identified through iTopia peptide binding assays and confirmed by ELISpot assays. Previously described HLA binding motifs are summarized in reference 49.