Table 1.
Patient no. | Disease outcomea | Immune statusb | Clade (within genotype 1)c | Age (yr) | Sexd | Consensus assembly GenBank accession no. | DENV-1 RNA (copies/ml) |
Day of illness | Sequence ID no. | |
---|---|---|---|---|---|---|---|---|---|---|
Peak viremia | Samples | |||||||||
49 | DF | Pri | 1 | 18 | M | FJ410197 | 7.97 × 108 | 2.60 × 108 | 2.7 | G2500 |
3.97 × 107 | 3.7 | G2501 | ||||||||
8.64 × 105 | 4.5 | G2502 | ||||||||
76 | DF | Pri | 1 | 21 | M | FJ410205 | 2.33 × 108 | 2.33 × 108 | 2.8 | G2506 |
5.42 × 106 | 3.8 | G2507 | ||||||||
1.10 × 106 | 4.8 | G2508 | ||||||||
336 | DF | Pri | 1 | 19 | F | FJ461319 | 5.33 × 107 | 5.33 × 107 | 2.4 | G2542 |
1.18 × 107 | 3.1 | G2543 | ||||||||
6.08 × 106 | 3.4 | G2544 | ||||||||
82 | DF | Sec | N/A | 15 | M | N/A | 1.61 × 109 | 1.61 × 109 | 3.0 | G2509 |
9.35 × 107 | 4.0 | G2510 | ||||||||
1.76 × 107 | 5.0 | G2511 | ||||||||
107 | DF | Sec | 4 | 18 | M | FJ432746 | 3.76 × 1010 | 1.34 × 1010 | 1.6 | G2512 |
1.04 × 1010 | 3.3 | G2513 | ||||||||
3.88 × 109 | 3.6 | G2514 | ||||||||
121 | DF | Sec | 5 | 22 | M | FJ410212 | 4.87 × 109 | 4.87 × 109 | 1.6 | G2515 |
2.19 × 108 | 3.6 | G2516 | ||||||||
5.42 × 106 | 4.9 | G2517 | ||||||||
171 | DF | Sec | 4 | 19 | M | FJ410279 | 6.10 × 1010 | 1.49 × 1010 | 1.9 | G2527 |
2.71 × 1010 | 3.7 | G2528 | ||||||||
2.43 × 108 | 4.7 | G2529 | ||||||||
309 | DF | Sec | 4 | 18 | F | FJ410216 | 1.03 × 1010 | 5.30 × 109 | 3.0 | G2536 |
7.06 × 108 | 4.0 | G2537 | ||||||||
7.75 × 107 | 5.0 | G2538 | ||||||||
323 | DF | Sec | 1 | 31 | F | FJ461316 | 2.31 × 1010 | 1.00 × 1010 | 1.4 | G2539 |
5.16 × 108 | 3.4 | G2540 | ||||||||
5.85 × 107 | 4.4 | G2541 | ||||||||
383 | DF | Sec | 1 | 34 | F | FJ410247 | 1.29 × 1010 | 2.22 × 109 | 1.8 | G2551 |
2.25 × 109 | 3.8 | G2552 | ||||||||
7.88 × 107 | 4.8 | G2553 | ||||||||
59 | DHF I | Sec | 4 | 25 | M | FJ410199 | 1.65 × 1010 | 1.65 × 1010 | 2.3 | G2503 |
2.65 × 109 | 3.3 | G2504 | ||||||||
1.91 × 107 | 4.0 | G2505 | ||||||||
146 | DHF II | Sec | 2 | 16 | M | FJ410269 | 3.99 × 109 | 3.99 × 109 | 2.4 | G2518 |
2.64 × 108 | 3.4 | G2519 | ||||||||
1.61 × 108 | 3.6 | G2520 | ||||||||
154 | DHF II | Sec | 1 | 34 | M | FJ410272 | 2.08 × 109 | 2.08 × 109 | 2.3 | G2521 |
3.04 × 108 | 3.3 | G2522 | ||||||||
5.00 × 106 | 4.0 | G2523 | ||||||||
162 | DHF II | Sec | 1 | 38 | M | FJ410275 | 1.24 × 1010 | 1.24 × 1010 | 2.4 | G2524 |
1.01 × 108 | 3.4 | G2525 | ||||||||
4.94 × 105 | 4.2 | G2526 | ||||||||
349 | DHF II | Sec | 1 | 20 | F | FJ547065 | 2.36 × 1010 | 2.36 × 1010 | 2.7 | G2545 |
1.56 × 109 | 3.7 | G2546 | ||||||||
3.79 × 107 | 4.7 | G2547 | ||||||||
376 | DHF II | Sec | 4 | 20 | F | FJ410244 | 2.06 × 108 | 2.06 × 108 | 2.6 | G2548 |
6.52 × 107 | 3.4 | G2549 | ||||||||
1.68 × 104 | 4.4 | G2550 | ||||||||
391 | DHF II | Sec | 5 | 18 | F | FJ410220 | 2.19 × 109 | 2.19 × 109 | 2.3 | G2554 |
1.52 × 108 | 3.3 | G2555 | ||||||||
1.22 × 106 | 4.0 | G2556 |
DF, dengue fever; DHF I and II, dengue hemorrhagic fever grades 1 and 2.
Pri, primary dengue; Sec, secondary dengue.
Clades of genotype I as designated by Raghwani et al. (24).
M, male; F, female.