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. 2012 Jan;86(1):473–483. doi: 10.1128/JVI.05981-11

Table 1.

Primers used in this work

Primer name Sequence
COL162 GAAGCTTGAATTCATGGGTGGCGGAAACAAC
COL163 GTCTAGAGTCGACTCAGGCGTAGTCGGGGACGTCATATGGGTAGAGCTCCAGCAGCCCC
COL281 CTGAGAATTCGCCACCATGGACCTCTTGGTCGACG
COL282 CTGACTCGAGTCACCCACCGTACTCGTCAATTC
COL307 CTGACTCGAGTCACGACAGTCTGCGCGTGTG
SS07 ACAGCCCTCCCGTCCGACACCCCCATATCGCTTCCCGACCTCCGGTCCCGATGGTGAGCAAGGGCGAGGAG
SS08 CCAAGCGCCCGGACGCTATCGGTGGTAACGGTGCTGGGGCGGTGAAATTGCTTGTACAGCTCGTCCATGCC
SS09 AGTTTGAGCAGATGTTTACCGATGCCCTTGGAATTGACGAGTACGGTGGGGTGAGCAAGGGCGAGGAG
SS10 GGGACGGGAGGGGAAAACCCAGACGGGGGATGCGGGTCCGGTCGCGCCCCTTACTTGTACAGCTCGTCCATG
SS15 CCTGAGCTACCAGTCCAAGCTGAGCAAAGACCCCA
SS16 TGGGGTCTTTGCTCAGCTTGGACTGGTAGCTCAGG
SS19 GATCGACTCGAGCTAAGATAGGAATTTACACTCCCGG
SS20 GATCGACTCGAGCTACATTTCTCCCAGGTCGCGA
SS24 GACTGAGAATTCGCCACCATGCGCGAGCACCTTAACCTCC
SS25 GATCGACTCGAGCTACGACAGTCTGCGCGTGTG
SS26 GATCGACTCGAGCTAGCCATGCAGGGTGGGAGG
SS27 GATCGACTCGAGCTAGGAATACGAGTCCAACTTCG
SS28 GATCGACTCGAGCTACGTACGCGCGCGGCTGTA
SS29 GATCGACTCGAGCTAGTCGTCGTCCGGGAGATC
SS30 GATCGACTCGAGCTACGGGAGGTTAAGGTGCTCG
SS33 GACTGAGAATTCCCTCCCACCCTGCATGGC
SS34 GACTGAGAATTCGCCTCTGGGTACTTTATGG
SS35 GACTGAGAATTCGCGAAGTTGGACTCGTATTC
SS36 GACTGAGAATTCCCCTCCGAGGCGGTCATG
SS37 GACTGAGAATTCTACAGCCGCGCGCGTACG
SS44 GATCGACTCGAGCTACATGACCGCCTCGGAGGG
SS45 GATCGACTCGAGCTACATAAAGTACCCAGAGGCG
SS46 GATCGACTCGAGCTACTCCTCCGTAGCCGCGCT
SS54 CAACCAGGCCCGCGCCGCTGCGTACTTTATGGTGTTG
SS55 CAACACCATAAAGTACGCAGCGGCGCGGGCCTGGTTG
SS56 GCCCGCGCCTCTGGGGCCGCTGCGGTGTTGATTCGGGC
SS57 GCCCGAATCAACACCGCAGCGGCCCCAGAGGCGCGGGC
SS58 CTGGGTACTTTATGGCGGCGGCTCGGGCGAAGTTGGAC
SS59 GTCCAACTTCGCCCGAGCCGCCGCCATAAAGTACCCAG
SS60 CTTTATGGTGTTGATTGCGGCGGCGTTGGACTCGTATTC
SS61 GAATACGAGTCCAACGCCGCCGCAATCAACACCATAAAG
SS62 GTTGATTCGGGCGAAGGCGGCCGCGTATTCCAGCTTCAC
SS63 GTGAAGCTGGAATACGCGGCCGCCTTCGCCCGAATCAAC
SS64 GCGAAGTTGGACTCGGCTGCCGCCTTCACGACCTCGCC
SS65 GGCGAGGTCGTGAAGGCGGCAGCCGAGTCCAACTTCGC
SS74 TTTATGGTGTTGATTGCGGCGAAGTTGGACTC
SS75 GAGTCCAACTTCGCCGCAATCAACACCATAAA
SS76 GTGTTGATTCGGGCGGCGTTGGACTCGTATTC
SS77 GAATACGAGTCCAACGCCGCCCGAATCAACAC
SS93 GGCCCGCGCCTCTGGGTACTTTATGGTGTTGATTCGGGCGGCGTTGGACTCGTATTCCAGCTAGGATGACGACGATAAGTAGGG
SS94 CTCGGAGGGCGAGGTCGTGAAGCTGGAATACGAGTCCAACGCCGCCCGAATCAACACCATAACAACCAATTAACCAATTCTGATTAG
SS102 TGTTGATTCGGGCGAGGTTGGACTCGTATTC
SS103 GAATACGAGTCCAACCTCGCCCGAATCAACA
SS104 TGTTGATTCGGGCGATGTTGGACTCGTATTC
SS105 GAATACGAGTCCAACATCGCCCGAATCAACA
SS106 GTGTTGATTCGGGCGCAGTTGGACTCGTATT
SS107 AATACGAGTCCAACTGCGCCCGAATCAACAC
SS108 GTGTTGATTCGGGCGCATTTGGACTCGTATTCC
SS109 GGAATACGAGTCCAAATGCGCCCGAATCAACAC