Table 3. Estimated time of homogeneous NBS-R cluster formation.
Cluster | Gene number | Gene_1 | Gene_2 | Ks | Mya |
CL2 (Va) | 2 | CL2_8 | CL2_9 | 0.68 | 34 |
CL7 (Va) | 3 | CL7_41 | CL7_42 | 2.32 | 117 |
CL8 (Va) | 10 | CL8_51 | CL8_48 | 1.31 | 66 |
CL27 (Va) | 7 | CL27_162 | CL27_168 | 1.58 | 79 |
CL29 (Va) | 4 | CL29_181 | CL29_183 | 0.54 | 27 |
CL32 (Va) | 15 | CL32_197 | CL32_209 | 2.74 | 138 |
CL33 (Va) | 12 | CL33_220 | CL33_222 | 2.59 | 130 |
CL36 (Va) | 5 | CL36_245 | CL36_247 | 0.40 | 20 |
CL42 (Va) | 4 | CL42_286 | CL42_287 | 1.92 | 97 |
CL45 (Va) | 8 | CL45_308 | CL45_311 | 2.55 | 128 |
CL46 (Va) | 2 | CL46_314 | CL46_315 | 1.63 | 82 |
CL4 (Va) | 13 | CL4_21 | CL4_21 | 2.32 | 116 |
CL6 (Va) | 3 | CL6_33 | CL6_34 | 0.92 | 46 |
CL9 (Va) | 2 | CL9_56 | CL9_57 | 0.38 | 19 |
CL11 (Va) | 4 | CL11_69 | CL11_70 | 0.98 | 49 |
CL13 (Va) | 3 | CL13_76 | CL13_78 | 0.91 | 46 |
CL15 (Vc) | 2 | CL15_85 | CL15_86 | 0.085 | 4 |
CL16 (Vc) | 6 | CL16_88 | CL16_91 | 2.52 | 127 |
CL17 (Vc) | 10 | CL17_98 | CL17_97 | 1.11 | 56 |
CL18 (Vc) | 5 | CL18_105 | CL18_107 | 2.01 | 101 |
CL19 (Vc) | 15 | CL19_116 | CL19_122 | 1.21 | 61 |
CL21 (Vc) | 2 | CL21_127 | CL21_128 | 1.35 | 68 |
CL22 (Vc) | 3 | CL22_135 | CL22_133 | 1.08 | 54 |
CL38 (Vc) | 3 | CL38_258 | CL38_260 | 0.57 | 29 |
CL39 (Vc) | 2 | CL39_261 | CL39_262 | 0.01 | 1 |
CL48 (Vc) | 2 | CL48_324 | CL48_325 | 0.08 | 4 |
CL51 (Vc) | 5 | CL51_334 | CL51_335 | 0.65 | 33 |
CL24 (na) | 3 | CL24_143 | CL24_144 | 0.95 | 48 |
CL41 (na) | 2 | CL41_279 | CL41_280 | 0.78 | 39 |
Ks values of two genes were used to infer time following Schranz and Mitchell-Olds [3].
Va and Vc are putative component genomes of grapevine.
na: indicates clusters belonging to chromosomes not assigned to Va or Vc genomes.