Table 2.

The 50 most highly expressed genes in the wild-type P. mirabilis swarmer cell transcriptome (P < 0.05)^a

Locus tag	Gene	Product	Fold change
PMI1629	fliE	Flagellar hook-basal body complex protein	222.21
PMI1651	flgE	Flagellar hook protein	188.70
PMI1653	flgC	Flagellar basal-body rod protein	183.85
PMI1630	fliF	Flagellar MS ring protein	176.34
PMI1654	flgB	Flagellar basal body rod protein	161.84
PMI1618	fliA	Flagellar biosynthesis sigma factor	157.71
PMI1961	ccm	Membrane protein	143.67
PMI1652	flgD	Basal-body rod modification protein	126.18
PMI0993	NA	Lipoprotein	123.58
PMI1649	flgG	Flagellar basal-body rod protein (distal rod protein)	106.70
PMI1631	fliG	Flagellar motor switch protein G	105.74
PMI1650	flgF	Flagellar basal-body rod protein	101.75
PMI1638	fliN	Flagellar motor switch protein	96.66
PMI1620	flaA	Flagellin 1	82.22
PMI0994	NA	Lipoprotein	75.58
PMI2808	NA	Methyl-accepting chemotaxis protein	72.94
PMI1634	fliJ	Flagellar biosynthesis chaperone	72.21
PMI1628	NA	Metalloelastase	71.00
PMI2834	aad	Amino acid deaminase	69.92
PMI1621	fliD	Flagellar capping protein	67.94
PMI0289	pgmB	β-Phosphoglucomutase	67.79
PMI0290	NA	Glycosyl hydrolase	60.48
PMI1635	fliK	Flagellar hook length control protein	56.15
PMI0288	rafY	Glycoporin	56.01
PMI1632	fliH	Flagellar assembly protein H	51.11
PMI1645	flgK	Flagellar hook-associated protein 1	51.07
PMI1648	flgH	Flagellar basal body L-ring protein	48.06
PMI1644	flgL	Flagellar hook-associated protein 3	40.45
PMI1617	fliZ	Flagellar biosynthesis protein	39.98
PMI1359	NA	Outer membrane protein	39.00
PMI1637	fliM	Flagellar motor switch protein	36.70
PMI1636	fliL	Flagellar basal body-associated protein	36.66
PMI2898	NA	Amino acid ABC transporter	34.56
PMI3460	NA	Lipoprotein	33.39
PMI1660	flhB	Flagellar biosynthesis protein	32.91
PMI1646	flgJ	Flagellar rod assembly protein	32.91
PMI0842	NA	Putative outer membrane receptor	32.32
PMI0833	NA	Hypothetical protein	32.27
PMI1647	flgI	Flagellar basal-body P-ring protein	30.94
PMI0992	NA	Hypothetical protein	29.00
PMI2149	NA	Exported amino acid deaminase	28.61
PMI0291	treB	PTS trehalose (maltose)-specific transporter	27.74
PMI1623	fliT	Flagellar protein	27.21
PMI1622	fliS	Flagellar protein	26.56
PMI1442	NA	Hypothetical protein	26.43
PMI1659	flhA	Flagellar biosynthesis protein	25.56
PMI1245	NA	Hypothetical protein	25.00
PMI0176	NA	Iron transport	24.07
PMI1662	cheY	Chemotaxis response regulator	23.76

^aFor all RNA-Seq analysis tables, P was <0.05, as determined via DESeq analysis. NA, not applicable; MS, membrane-supramembrane; PTS, phosphotransferase system.