Table 2.
Potential | Force constant | 300K Dynamics | 300-20K Simulated Annealing |
---|---|---|---|
| |||
SANI (DC restraints) | (kcal•sec2•mol-1) | 0.1 | 0.1-1.0 |
DCSA (CSA restraints) | (kcal•sec2•mol-1) | 0.001 | 0.001-0.01 |
CDIH (predicted dihedral restraints) | (kcal•mol-1•rad-2) | 300 | 300 |
RAMA (knowledge-based dihedral restraints) | (kcal•mol-1) | 0.02 | 0.02-2.0 |
ANG (bond angle) | (kcal•mol-1•rad-2) | 0.4 | 0.4-1.0 |
IMPR (improper dihedral angle) | (kcal•mol-1•rad-2) | 0.1 | 0.1-1.0 |
VDWa (non-bonded atom-atom repulsion) | (kcal•mol-1•Å-4) | 0.004 | 0.004-4.0 |
Atomic radii are scaled by 0.4 during initial dynamics and minimization and scaled by a value ramped from 0.4 to 0.8 during simulated annealing.