Table 1.
List of KSHV-encoded miRNAs.
| Name | Sequence | Genome position¶ |
|---|---|---|
| KSHV-miR-K12-1-5p | AUUACAGGAAACUGGGUGUAAG | 122138–122159 |
| AUUACAGGAAACUGGGUGUAAGC | ||
| AUUACAGGAAACUGGGUGUAAGCU | ||
| KSHV-miR-K12-1-3p | GCAGCACCUGUUUCCUGCAACC | 122100–122121 |
| KSHV-miR-K12-2-5p | AACUGUAGUCCGGGUCGAUCU | 121978–121998 |
| AACUGUAGUCCGGGUCGAUCUG | ||
| KSHV-miR-K12-2-3p | GAUCUUCCAGGGCUAGAGCUG | 121935–121955 |
| GAUCUUCCAGGGCUAGAGCUGC | ||
| KSHV-miR-K12-3-5p | UCACAUUCUGAGGACGGCAGC | 121836–121856 |
| UCACAUUCUGAGGACGGCAGCG | ||
| UCACAUUCUGAGGACGGCAGCGA | ||
| KSHV-miR-K12-3-3p | UCGCGGUCACAGAAUGUG | 121797–121814 |
| GUCGCGGUCACAGAAUGU | ||
| UCGCGGUCACAGAAUGUGACA | ||
| KSHV-miR-K12-4-5p | AGCUAAACCGCAGUACUCUAG | 121704–121724 |
| AGCUAAACCGCAGUACUCUAGG | ||
| KSHV-miR-K12-4-3p | UAGAAUACUGAGGCCUAGCUG | 121666–121686 |
| UAGAAUACUGAGGCCUAGCUGA | ||
| KSHV-miR-K12-5-5p | AGGUAGUCCCUGGUGCCCUAA | 121554–121574 |
| AGGUAGUCCCUGGUGCCCUAAG | ||
| UAGGUAGUCCCUGGUGCCCUAA | ||
| UAGGUAGUCCCUGGUGCCCUAAG | ||
| KSHV-miR-K12-5-3p | UAGGAUGCCUGGAACUUGCC | 121516–121535 |
| UAGGAUGCCUGGAACUUGCCGG | ||
| UAGGAUGCCUGGAACUUGCCGGU | ||
| KSHV-miR-K12-6-5p | CCAGCAGCACCUAAUCCAUCG | 121045–121065 |
| CCAGCAGCACCUAAUCCAUCGG | ||
| KSHV-miR-K12-6-3p | UGAUGGUUUUCGGGCUGUUGAG | 121012–121033 |
| UGAUGGUUUUCGGGCUGUUGAGC | ||
| KSHV-miR-K12-7-5p | AGCGCCACCGGACGGGGAUUUA | 120646–120667 |
| AGCGCCACCGGACGGGGAUUUAU | ||
| AGCGCCACCGGACGGGGAUUUAUG | ||
| KSHV-miR-K12-7-3p | UGAUCCCAUGUUGCUGGCGC | 120608–120627 |
| UGAUCCCAUGUUGCUGGCGCU | ||
| UGAUCCCAUGUUGCUGGCGCUC | ||
| KSHV-miR-K12-8-5p | ACUCCCUCACUAACGCCCCGC | 120234–120254 |
| ACUCCCUCACUAACGCCCCGCU | ||
| KSHV-miR-K12-8-3p | CUAGGCGCGACUGAGAGAG | 120196–120214 |
| CUAGGCGCGACUGAGAGAGC | ||
| CUAGGCGCGACUGAGAGAGCA | ||
| CUAGGCGCGACUGAGAGAGCAC | ||
| KSHV-miR-K12-9-5p | ACCCAGCUGCGUAAACCCCGC | 119587–119607 |
| ACCCAGCUGCGUAAACCCCGCU | ||
| KSHV-miR-K12-9-3p | CUGGGUAUACGCAGCUGCGUA | 119553–119573 |
| CUGGGUAUACGCAGCUGCGUAA | ||
| KSHV-miR-K12-10a-5p | GGCUUGGGGCGAUACCACCACU | 118116–118137 |
| KSHV-miR-K12-10a-3p | UAGUGUUGUCCCCCCGAGUGG | 118077–118097 |
| UAGUGUUGUCCCCCCGAGUGGC | ||
| UUAGUGUUGUCCCCCCGAGUGG | ||
| UUAGUGUUGUCCCCCCGAGUGGC | ||
| KSHV-miR-K12-10b-3p | UGGUGUUGUCCCCCCGAGUGGC | 118077–118097 |
| UUGGUGUUGUCCCCCCGAGUGG | ||
| UUGGUGUUGUCCCCCCGAGUGG | ||
| UUGGUGUUGUCCCCCCGAGUGGC | ||
| KSHV-miR-K12-11-5p | GGUCACAGCUUAAACAUUUC | 120868–120887 |
| GGUCACAGCUUAAACAUUUCUA | ||
| GGUCACAGCUUAAACAUUUCUAG | ||
| GGUCACAGCUUAAACAUUUCUAGG | ||
| KSHV-miR-K12-11-3p | UUAAUGCUUAGCCUGUGUCCGA | 120827–120848 |
| KSHV-miR-K12-12-5p | AACCAGGCCACCAUUCCUCUC | 117837–117857 |
| AACCAGGCCACCAUUCCUCUCC | ||
| AACCAGGCCACCAUUCCUCUCCG | ||
| UCAACCAGGCCACCAUUCCUC | ||
| KSHV-miR-K12-12-3p | UGGGGGAGGGUGCCCUGGUUGA | 117798–117819 |
Most abundant forms of KSHV mature miRNAs were listed here.
¶ All positions indicated here were the positions of the sequences listed in the first lines and were referenced in KSHV genome (accession number: AF148805).