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. 2011 Nov 17;40(2):e12. doi: 10.1093/nar/gkr995

Table 2.

Supported file formats in JAnnot, an up to date list is available at http://genomeview.org/content/data-formats

Description File types
Sequence and annotation EMBL, Genbank
Sequence fasta
Annotation GFF, BED, Blast, GeneMark, PTT, TransTermHP TBL (Tair)
Multiple alignment ClustalW, MAF, multi-fasta
Short-read alignment BAM, MAQ/MapView
Continuous values/coverage wiggle, TDF