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. 2011 Nov;13(11):2957–2975. doi: 10.1111/j.1462-2920.2011.02570.x

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Copyright © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd

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Fig. 3 — Phylogenetic affiliation of archaeal 16S rRNA sequences recovered from methanogenic microcosms. Clone frequency distributions in archaeal 16S rRNA gene clone libraries from the inoculum and initial day 22 samples (bottom panel) and in samples from the methanogenic oil degrading microcosms (top panel) and control microcosms with no added oil (middle panel). Data from clone libraries from day 302 (filled bars) and day 686 (open bars) are shown. Clones were grouped into categories based on their genus, order, class or phylum level affiliation after phylogenetic analysis with the ARB software package using an RDP guide tree. The affiliation of individual sequence was cross-checked using the RDP Taxonomical hierarchy with the Naive Bayesian rRNA Classifier Version 2.0, July 2007.