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Alignment of the 5' and 3' terminal 80 bp from Ac, Ds2-21, and Ds2-31. All three 5' ends align well, except for two SNPs in Ds2-21. In contrast, the 3'ends of Ac and Ds2-21 align well, but the 3' end of Ds2-31 is interrupted by a duplication and a deletion.
